GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for aspS2 (aspartyl-tRNA(Asp/Asn) synthetase) in L-asparagine biosynthesis

Or see other characterized proteins similar to aspS2

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Definition of aspS2

Fetched 33 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 33 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 577-642 amino acids (not heteromeric)

O32038 aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bacillus subtilis
PFams: tRNA_anti-codon, tRNA-synt_2, GAD
592 amino acids: PaperBLAST, CDD, Compare to cluster

SYDND_HELPY / P56459 Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
P56459 aspartate-tRNA ligase (EC 6.1.1.12) from Helicobacter pylori
PFams: tRNA_anti-codon, tRNA-synt_2, GAD
577 amino acids: PaperBLAST, CDD, Compare to cluster

Q6MI59 aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bdellovibrio bacteriovorus
PFams: tRNA_anti-codon, tRNA-synt_2, GAD
642 amino acids: PaperBLAST, CDD, Compare to cluster

Q9KDG1 aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans
PFams: tRNA_anti-codon, tRNA-synt_2, GAD
595 amino acids: PaperBLAST, CDD, Compare to cluster

SYDND_CHLTR / O84546 Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Chlamydia trachomatis (strain D/UW-3/Cx)
PFams: tRNA_anti-codon, tRNA-synt_2, GAD
582 amino acids: PaperBLAST, CDD, Compare to cluster

SYDND_PSEAE / Q51422 Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: tRNA_anti-codon, tRNA-synt_2, GAD
591 amino acids: PaperBLAST, CDD, Compare to cluster

Q9RUN7 aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
SYD_DEIRA / Q9RUN7 Aspartate--tRNA(Asp) ligase; Aspartyl-tRNA synthetase 1; AspRS1; Discriminating aspartyl-tRNA synthetase; D-AspRS; EC 6.1.1.12 from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
PFams: tRNA_anti-codon, tRNA-synt_2, GAD
577 amino acids: PaperBLAST, CDD, Compare to cluster

A0A0H3C7V8_CAUVN Aspartate--tRNA(Asp/Asn) ligase {ECO:0000256|HAMAP-Rule:MF_00044}; EC=6.1.1.23 {ECO:0000256|HAMAP-Rule:MF_00044}; Aspartyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000256|HAMAP-Rule:MF_00044}; AltName: Full=Non-discriminating aspartyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00044}; Short=ND-AspRS {ECO:0000256|HAMAP-Rule:MF_00044}
612 amino acids: PaperBLAST, CDD, Compare to cluster

A0A2I7KAZ8 Aspartate--tRNA(Asp/Asn) ligase {ECO:0000256|HAMAP-Rule:MF_00044}; EC=6.1.1.23 {ECO:0000256|HAMAP-Rule:MF_00044}; Aspartyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000256|HAMAP-Rule:MF_00044}; AltName: Full=Non-discriminating aspartyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00044}; Short=ND-AspRS {ECO:0000256|HAMAP-Rule:MF_00044}
592 amino acids: PaperBLAST, CDD, Compare to cluster

B8DMM5_DESVM Aspartate--tRNA(Asp/Asn) ligase {ECO:0000256|HAMAP-Rule:MF_00044}; EC=6.1.1.23 {ECO:0000256|HAMAP-Rule:MF_00044}; Aspartyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000256|HAMAP-Rule:MF_00044}; AltName: Full=Non-discriminating aspartyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00044}; Short=ND-AspRS {ECO:0000256|HAMAP-Rule:MF_00044}
614 amino acids: PaperBLAST, CDD, Compare to cluster

SYDND_DESVH Aspartate--tRNA(Asp/Asn) ligase {ECO:0000255|HAMAP-Rule:MF_00044}; EC=6.1.1.23 {ECO:0000255|HAMAP-Rule:MF_00044}; Aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000255|HAMAP-Rule:MF_00044}; AltName: Full=Non-discriminating aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=ND-AspRS {ECO:0000255|HAMAP-Rule:MF_00044}
610 amino acids: PaperBLAST, CDD, Compare to cluster

SYDND_DINSH Aspartate--tRNA(Asp/Asn) ligase {ECO:0000255|HAMAP-Rule:MF_00044}; EC=6.1.1.23 {ECO:0000255|HAMAP-Rule:MF_00044}; Aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000255|HAMAP-Rule:MF_00044}; AltName: Full=Non-discriminating aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=ND-AspRS {ECO:0000255|HAMAP-Rule:MF_00044}
590 amino acids: PaperBLAST, CDD, Compare to cluster

SYDND_SYNE7 Aspartate--tRNA(Asp/Asn) ligase {ECO:0000255|HAMAP-Rule:MF_00044}; EC=6.1.1.23 {ECO:0000255|HAMAP-Rule:MF_00044}; Aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000255|HAMAP-Rule:MF_00044}; AltName: Full=Non-discriminating aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=ND-AspRS {ECO:0000255|HAMAP-Rule:MF_00044}
599 amino acids: PaperBLAST, CDD, Compare to cluster

CCNA_01969 aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Caulobacter crescentus NA1000
PFams: tRNA_anti-codon, tRNA-synt_2, GAD
612 amino acids: PaperBLAST, CDD, Compare to cluster

Dshi_2633 aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Dinoroseobacter shibae DFL-12
PFams: tRNA_anti-codon, tRNA-synt_2, GAD
590 amino acids: PaperBLAST, CDD, Compare to cluster

DvMF_2038 aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Desulfovibrio vulgaris Miyazaki F
PFams: tRNA_anti-codon, tRNA-synt_2, GAD
614 amino acids: PaperBLAST, CDD, Compare to cluster

PGA1_c24530 aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Phaeobacter inhibens BS107
PFams: tRNA_anti-codon, tRNA-synt_2, GAD
592 amino acids: PaperBLAST, CDD, Compare to cluster

Synpcc7942_1313 aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Synechococcus elongatus PCC 7942
PFams: tRNA_anti-codon, tRNA-synt_2, GAD
599 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 422-626 amino acids (not heteromeric)

SYDC_SCHPO / O74407 Aspartate--tRNA ligase, cytoplasmic; Aspartyl-tRNA synthetase; AspRS; EC 6.1.1.12 (from HMM only) from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
PFams: tRNA_anti-codon, tRNA-synt_2
580 amino acids: PaperBLAST, CDD, Compare to cluster

C4LZN0 aspartate-tRNA ligase (EC 6.1.1.12); aspartate-tRNAAsn ligase (EC 6.1.1.23) from Entamoeba histolytica
PFams: tRNA_anti-codon, tRNA-synt_2
544 amino acids: PaperBLAST, CDD, Compare to cluster

SYDND_HALSA / O07683 Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)
O07683 aspartate-tRNAAsn ligase (EC 6.1.1.23) from Halobacterium salinarum
PFams: tRNA_anti-codon, tRNA-synt_2
436 amino acids: PaperBLAST, CDD, Compare to cluster

SYDC_HUMAN / P14868 Aspartate--tRNA ligase, cytoplasmic; Aspartyl-tRNA synthetase; AspRS; Cell proliferation-inducing gene 40 protein; EC 6.1.1.12 (from HMM only) from Homo sapiens (Human)
P14868 aspartate-tRNA ligase (EC 6.1.1.12) from Homo sapiens
PFams: tRNA_anti-codon, tRNA-synt_2
501 amino acids: PaperBLAST, CDD, Compare to cluster

SYD_THEKO / Q52428 Aspartate--tRNA(Asp) ligase; Aspartyl-tRNA synthetase; AspRS; Discriminating aspartyl-tRNA synthetase; D-AspRS; EC 6.1.1.12 (from HMM only) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Q52428 aspartate-tRNA ligase (EC 6.1.1.12) from Thermococcus kodakarensis
PFams: tRNA_anti-codon, tRNA-synt_2
438 amino acids: PaperBLAST, CDD, Compare to cluster

Q585M3 aspartate-tRNA ligase (EC 6.1.1.12) (from HMM only) from Trypanosoma brucei
PFams: tRNA_anti-codon, tRNA-synt_2
560 amino acids: PaperBLAST, CDD, Compare to cluster

SYDND_THET8 / Q5SIC2 Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase 2; AspRS2; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q5SIC2 aspartate-tRNA ligase (EC 6.1.1.12) from Thermus thermophilus
PFams: tRNA_anti-codon, tRNA-synt_2
422 amino acids: PaperBLAST, CDD, Compare to cluster

Q8I2B1 aspartate-tRNA ligase (EC 6.1.1.12) (from HMM only) from Plasmodium falciparum
PFams: tRNA_anti-codon, tRNA-synt_2
626 amino acids: PaperBLAST, CDD, Compare to cluster

SYDC_MOUSE / Q922B2 Aspartate--tRNA ligase, cytoplasmic; Aspartyl-tRNA synthetase; AspRS; EC 6.1.1.12 (from HMM only) from Mus musculus (Mouse)
Q922B2 aspartate-tRNA ligase (EC 6.1.1.12) from Mus musculus
PFams: tRNA_anti-codon, tRNA-synt_2
501 amino acids: PaperBLAST, CDD, Compare to cluster

SYDND_METTH / O26328 Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium thermoautotrophicum)
O26328 aspartate-tRNAAsn ligase (EC 6.1.1.23) from Methanothermobacter thermautotrophicus
PFams: tRNA_anti-codon, tRNA-synt_2
437 amino acids: PaperBLAST, CDD, Compare to cluster

SYDC_YEAST / P04802 Aspartate--tRNA ligase, cytoplasmic; Aspartyl-tRNA synthetase; AspRS; EC 6.1.1.12 (from HMM only) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: tRNA_anti-codon, tRNA-synt_2
557 amino acids: PaperBLAST, CDD, Compare to cluster

SYDC_RAT / P15178 Aspartate--tRNA ligase, cytoplasmic; Aspartyl-tRNA synthetase; AspRS; EC 6.1.1.12 (from HMM only) from Rattus norvegicus (Rat)
PFams: tRNA_anti-codon, tRNA-synt_2
501 amino acids: PaperBLAST, CDD, Compare to cluster

SYDND_METMA / Q8Q0R2 Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarcina frisia)
PFams: tRNA_anti-codon, tRNA-synt_2
444 amino acids: PaperBLAST, CDD, Compare to cluster

SYDC2_ARATH / Q9M084 Aspartate--tRNA ligase 2, cytoplasmic; Aspartyl-tRNA synthetase; AspRS; Protein IMPAIRED IN BABA-INDUCED DISEASE IMMUNITY 1; EC 6.1.1.12 (from HMM only) from Arabidopsis thaliana (Mouse-ear cress)
PFams: tRNA_anti-codon, tRNA-synt_2
558 amino acids: PaperBLAST, CDD, Compare to cluster

Q9RVH4 aspartyl-tRNA synthetase, non-discriminating (EC 6.1.1.23) from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
SYDND_DEIRA / Q9RVH4 Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase 2; AspRS2; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
PFams: tRNA_anti-codon, tRNA-synt_2
435 amino acids: PaperBLAST, CDD, Compare to cluster