GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for aroD (3-dehydroquinate dehydratase) in chorismate biosynthesis

Or see other characterized proteins similar to aroD

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Or cluster curated proteins matching a keyword

Definition of aroD

Fetched 50 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 49 of these sequences

Found 4 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 142-173 amino acids (not heteromeric)

A0A0H3FM50 3-dehydroquinate dehydratase (EC 4.2.1.10) from Klebsiella aerogenes
PFams: DHquinase_II
150 amino acids: PaperBLAST, CDD, Compare to cluster

A0A124C1Y7 3-dehydroquinate dehydratase (EC 4.2.1.10) from Streptomyces acidiscabies
PFams: DHquinase_II
157 amino acids: PaperBLAST, CDD, Compare to cluster

A1SZA3 3-dehydroquinate dehydratase (EC 4.2.1.10) from Psychromonas ingrahamii
PFams: DHquinase_II
149 amino acids: PaperBLAST, CDD, Compare to cluster

A3M692 3-dehydroquinate dehydratase (EC 4.2.1.10) from Acinetobacter baumannii
PFams: DHquinase_II
151 amino acids: PaperBLAST, CDD, Compare to cluster

A5WDH9 3-dehydroquinate dehydratase (EC 4.2.1.10) from Psychrobacter sp. PRwf-1
PFams: DHquinase_II
167 amino acids: PaperBLAST, CDD, Compare to cluster

A8AQF2 3-dehydroquinate dehydratase (EC 4.2.1.10) from Citrobacter koseri
PFams: DHquinase_II
150 amino acids: PaperBLAST, CDD, Compare to cluster

B2A551 3-dehydroquinate dehydratase (EC 4.2.1.10) from Natranaerobius thermophilus
PFams: DHquinase_II
144 amino acids: PaperBLAST, CDD, Compare to cluster

D1A7X0 3-dehydroquinate dehydratase (EC 4.2.1.10) from Thermomonospora curvata
PFams: DHquinase_II
149 amino acids: PaperBLAST, CDD, Compare to cluster

D4LCT8 3-dehydroquinate dehydratase (EC 4.2.1.10) from Ruminococcus champanellensis
PFams: DHquinase_II
148 amino acids: PaperBLAST, CDD, Compare to cluster

D4S0D1 3-dehydroquinate dehydratase (EC 4.2.1.10) from Butyrivibrio crossotus
PFams: DHquinase_II
142 amino acids: PaperBLAST, CDD, Compare to cluster

E4RLB7 3-dehydroquinate dehydratase (EC 4.2.1.10) from Halanaerobium hydrogeniformans
PFams: DHquinase_II
148 amino acids: PaperBLAST, CDD, Compare to cluster

G8M0G7 3-dehydroquinate dehydratase (EC 4.2.1.10) from Acetivibrio clariflavus
PFams: DHquinase_II
142 amino acids: PaperBLAST, CDD, Compare to cluster

I0L192 3-dehydroquinate dehydratase (EC 4.2.1.10) from Micromonospora lupini
PFams: DHquinase_II
143 amino acids: PaperBLAST, CDD, Compare to cluster

M1E6S9 3-dehydroquinate dehydratase (EC 4.2.1.10) from Thermodesulfobium narugense
PFams: DHquinase_II
150 amino acids: PaperBLAST, CDD, Compare to cluster

N1V364 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arthrobacter crystallopoietes
PFams: DHquinase_II
155 amino acids: PaperBLAST, CDD, Compare to cluster

O30557 3-dehydroquinate dehydratase (EC 4.2.1.10) from Pseudomonas aeruginosa
PFams: DHquinase_II
147 amino acids: PaperBLAST, CDD, Compare to cluster

O52377 3-dehydroquinate dehydratase (EC 4.2.1.10) from Corynebacterium glutamicum
PFams: DHquinase_II
145 amino acids: PaperBLAST, CDD, Compare to cluster

AROQ_STRCO / P15474 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P15474 3-dehydroquinate dehydratase (EC 4.2.1.10) from Streptomyces coelicolor
PFams: DHquinase_II
157 amino acids: PaperBLAST, CDD, Compare to cluster

AROQ_MYCTU / P9WPX7 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WPX7 3-dehydroquinate dehydratase (EC 4.2.1.10) from Mycobacterium tuberculosis
PFams: DHquinase_II
147 amino acids: PaperBLAST, CDD, Compare to cluster

Q0VMZ2 3-dehydroquinate dehydratase (EC 4.2.1.10) from Alcanivorax borkumensis
PFams: DHquinase_II
160 amino acids: PaperBLAST, CDD, Compare to cluster

AROQ_HELPY / Q48255 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Q48255 3-dehydroquinate dehydratase (EC 4.2.1.10) from Helicobacter pylori
PFams: DHquinase_II
167 amino acids: PaperBLAST, CDD, Compare to cluster

Q88IJ6 3-dehydroquinate dehydratase (EC 4.2.1.10) from Pseudomonas putida
PFams: DHquinase_II
145 amino acids: PaperBLAST, CDD, Compare to cluster

Q9PH97 3-dehydroquinate dehydratase (EC 4.2.1.10) from Xylella fastidiosa
PFams: DHquinase_II
148 amino acids: PaperBLAST, CDD, Compare to cluster

W6JLW3 3-dehydroquinate dehydratase (EC 4.2.1.10) from Gluconobacter oxydans
PFams: DHquinase_II
160 amino acids: PaperBLAST, CDD, Compare to cluster

3DHQ_EMENI / P05147 Catabolic 3-dehydroquinase; cDHQase; 3-dehydroquinate dehydratase; EC 4.2.1.10 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans)
GI|2404 catabolic 3-dehydroquinase from Emericella nidulans
PFams: DHquinase_II
153 amino acids: PaperBLAST, CDD, Compare to cluster

3DHQ_NEUCR / P05195 Catabolic 3-dehydroquinase; cDHQase; 3-dehydroquinate dehydratase; Quinic acid degradation cluster protein 2f; EC 4.2.1.10 from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
PFams: DHquinase_II
173 amino acids: PaperBLAST, CDD, Compare to cluster

AROQ_ACTPL / P43877 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 from Actinobacillus pleuropneumoniae (Haemophilus pleuropneumoniae)
PFams: DHquinase_II
154 amino acids: PaperBLAST, CDD, Compare to cluster

AROQ_BACSU / P54517 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 from Bacillus subtilis (strain 168)
P54517 3-dehydroquinate dehydratase (EC 4.2.1.10) from Bacillus subtilis
PFams: DHquinase_II
148 amino acids: PaperBLAST, CDD, Compare to cluster

3DHQ_CANAL / Q59Z17 Catabolic 3-dehydroquinase; cDHQase; 3-dehydroquinate dehydratase; EC 4.2.1.10 from Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast)
PFams: DHquinase_II
146 amino acids: PaperBLAST, CDD, Compare to cluster

Q5FTS6 periplasmic dehydroquinate dehydratase (EC 4.2.1.10) from Gluconobacter oxydans (strain 621H)
PFams: DHquinase_II
160 amino acids: PaperBLAST, CDD, Compare to cluster

A4QB64 3-dehydroquinate dehydratase (EC 4.2.1.10) from Corynebacterium glutamicum (strain R)
PFams: DHquinase_II
145 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 218-272 amino acids (not heteromeric)

b1693 3-dehydroquinate dehydratase (EC 4.2.1.10) from Escherichia coli K-12 substr. MG1655
P05194 3-dehydroquinate dehydratase (EC 4.2.1.10) from Escherichia coli (strain K12)
AROD_ECOLI / P05194 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Escherichia coli (strain K12)
P05194 3-dehydroquinate dehydratase (EC 4.2.1.10) from Escherichia coli
RF|NP_416208.1 3-dehydroquinate dehydratase; EC 4.2.1.10 from Escherichia coli K12
PFams: DHquinase_I
252 amino acids: PaperBLAST, CDD, Compare to cluster

AROD_SALTI / P24670 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Salmonella typhi
P24670 3-dehydroquinate dehydratase (EC 4.2.1.10) from Salmonella enterica subsp. enterica serovar Typhi
PFams: DHquinase_I
252 amino acids: PaperBLAST, CDD, Compare to cluster

AROD_ENTFA / P36923 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Enterococcus faecalis (strain ATCC 700802 / V583)
P36923 3-dehydroquinate dehydratase (EC 4.2.1.10) from Enterococcus faecalis
PFams: DHquinase_I
253 amino acids: PaperBLAST, CDD, Compare to cluster

AROD_SALTY / P58687 3-dehydroquinate dehydratase; 3-dehydroquinase; DHQD; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P58687 3-dehydroquinate dehydratase (EC 4.2.1.10) from Salmonella enterica
PFams: DHquinase_I
252 amino acids: PaperBLAST, CDD, Compare to cluster

AROD_AQUAE / O66440 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Aquifex aeolicus (strain VF5)
PFams: DHquinase_I
219 amino acids: PaperBLAST, CDD, Compare to cluster

AROD_CLOD6 / Q186A6 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Clostridioides difficile (strain 630) (Peptoclostridium difficile)
PFams: DHquinase_I
255 amino acids: PaperBLAST, CDD, Compare to cluster

Q59087 catabolic 3-dehydroquinate dehydratase (EC 4.2.1.10) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
3DHQ_ACIAD / Q59087 Catabolic 3-dehydroquinate dehydratase; 3-dehydroquinase; EC 4.2.1.10 from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
PFams: DHquinase_I
272 amino acids: PaperBLAST, CDD, Compare to cluster

AROD_GEOKA / Q5KY94 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Geobacillus kaustophilus (strain HTA426)
PFams: DHquinase_I
257 amino acids: PaperBLAST, CDD, Compare to cluster

AROD_STAAR / Q6GII7 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Staphylococcus aureus (strain MRSA252)
PFams: DHquinase_I
238 amino acids: PaperBLAST, CDD, Compare to cluster

Q6LXF7 3-dehydroquinate dehydratase (EC 4.2.1.10) from Methanococcus maripaludis (strain S2 / LL)
AROD_METMP / Q6LXF7 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Methanococcus maripaludis (strain S2 / LL)
PFams: DHquinase_I
218 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 521-603 amino acids (not heteromeric)

A0A5H2WZU5 shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, F420_oxidored, SDH_C
532 amino acids: PaperBLAST, CDD, Compare to cluster

A0A5H2X4C4 shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, F420_oxidored, SDH_C
538 amino acids: PaperBLAST, CDD, Compare to cluster

Q6PUF9 shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, F420_oxidored
569 amino acids: PaperBLAST, CDD, Compare to cluster

Q6PUG0 shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum
PFams: DHquinase_I, Shikimate_dh_N
521 amino acids: PaperBLAST, CDD, Compare to cluster

Q9SQT8 shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
DHQSD_ARATH / Q9SQT8 Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana (Mouse-ear cress)
Q9SQT8 shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, IlvN, F420_oxidored, FAD_binding_2, SDH_C
603 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 4 1583-1588 amino acids (not heteromeric)

ARO1_EMENI / P07547 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans)
P07547 shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans
CH_122161 pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
PFams: DHQ_synthase, Fe-ADH_2, EPSP_synthase, SKI, DHquinase_I, Shikimate_dh_N, SDH_C
1583 amino acids: PaperBLAST, CDD, Compare to cluster

P08566 pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ARO1_YEAST / P08566 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: DHQ_synthase, EPSP_synthase, SKI, DHquinase_I, Shikimate_dh_N, Shikimate_DH, SDH_C
1588 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

AROD_ARCFU / O30011 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
O30011 3-dehydroquinate dehydratase (EC 4.2.1.10) from Archaeoglobus fulgidus
PFams: DHquinase_I
196 amino acids: PaperBLAST, CDD
(similar to SwissProt::O66440 from Cluster 2, but similarity to seed sequence is below thresholds)

G0EDV3 3-dehydroquinate dehydratase; EC=4.2.1.10
240 amino acids: PaperBLAST, CDD