Alignments for a candidate for fbp in Desulfovibrio vulgaris Hildenborough JW710

Align fructose-bisphosphate aldolase (EC 4.1.2.13) (characterized)
to candidate 207620 DVU2143 fructose-1,6-bisphosphate aldolase, class II (TIGR)

Query= BRENDA::Q9RHA2
         (305 letters)



>FitnessBrowser__DvH:207620
          Length = 307

 Score =  285 bits (729), Expect = 9e-82
 Identities = 148/292 (50%), Positives = 204/292 (69%), Gaps = 4/292 (1%)

Query: 7   EILKKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVE 66
           E+  +A  EG+ VGAFNVNNME +Q +++A  E+R+P+IL +S GA KY G+   +  +E
Sbjct: 8   EMFARAYREGHAVGAFNVNNMEIIQGIMQAGAEERAPLILQVSAGARKYAGQNYIIKLIE 67

Query: 67  LAK-EARVPVAVHLDHGSSYESVLRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAV 125
            A  +  +PV +HLDHG  ++     +  GFTSVMID SH  +E N+  TRRVVE AH  
Sbjct: 68  AALLDTDLPVVLHLDHGQDFDICKSCIDGGFTSVMIDGSHLSYEENIAVTRRVVEYAHDK 127

Query: 126 GVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKG 185
           GV VEAELG+LAG+E+ V+ +   ++ T+P++A  F++RTG D LA+AIGTSHGAYK  G
Sbjct: 128 GVWVEAELGQLAGVEDEVSAEH--SVYTDPDQAVEFVQRTGCDSLAIAIGTSHGAYKFTG 185

Query: 186 RPFIDHARLERIARLVPA-PLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAIS 244
              +D ARLE I +++P  PLVLHGAS+VP E VE   A GG++G A G+  + ++KA +
Sbjct: 186 DAKLDFARLETITKMLPDYPLVLHGASSVPQEFVEMANAYGGKVGGARGVPEDLLRKAAT 245

Query: 245 LGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRM 296
            G+ KIN DTD+RLA TA IR+   +NP +FDPR YL PAREAVK +V+ ++
Sbjct: 246 FGVCKINIDTDIRLAMTATIRKHFIENPGDFDPRAYLKPAREAVKNMVQHKI 297


Lambda     K      H
   0.317    0.134    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 257
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 307
Length adjustment: 27
Effective length of query: 278
Effective length of database: 280
Effective search space:    77840
Effective search space used:    77840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate 207620 DVU2143 (fructose-1,6-bisphosphate aldolase, class II (TIGR))
to HMM TIGR01859 (fba: fructose-1,6-bisphosphate aldolase, class II (EC 4.1.2.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.13454.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13454.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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