Align 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 (characterized)
to candidate 208498 DVU2985 3-isopropylmalate dehydrogenase (TIGR)
Query= SwissProt::Q56268 (358 letters) >FitnessBrowser__DvH:208498 Length = 357 Score = 432 bits (1110), Expect = e-126 Identities = 218/353 (61%), Positives = 271/353 (76%), Gaps = 2/353 (0%) Query: 4 IAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAM 63 I + GDGIGPEIVA +VLDAV + + + L+GGAA+DA+ PLP A+++ Sbjct: 5 ICLLPGDGIGPEIVAQGTKVLDAVARRFGHTVSTSSALIGGAAIDATGSPLPDATVEACR 64 Query: 64 AADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPEL 123 +DAV+LGAVGGP+WD P KRPE+GLL +RK L L+ANLRPA +FP+L A LR ++ Sbjct: 65 TSDAVLLGAVGGPKWDDLPSEKRPEKGLLGIRKALGLFANLRPAALFPELAGACLLRADI 124 Query: 124 VR-DVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAFRAAQGRR 182 +D++VVRELTGD+YFGQP G+E DG R GFNTM+YDEDE+RRIA VAF A+ R+ Sbjct: 125 AAAGLDLVVVRELTGDVYFGQPAGIETRDGLRTGFNTMIYDEDEVRRIARVAFDTARARK 184 Query: 183 KQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGN 242 +++CSVDKANVL T+RLWREVV EVARDYPDV LSHMYVDNAAMQL+R PAQFDV++TGN Sbjct: 185 RRVCSVDKANVLATSRLWREVVEEVARDYPDVELSHMYVDNAAMQLVRWPAQFDVIVTGN 244 Query: 243 MFGDILSDEASQLTGSIGMLPSASLGE-GRAMYEPIHGSAPDIAGQDKANPLATILSVAM 301 +FGDILSDEA+ +TGSIGMLPSAS+G G A++EPIHGSAPDIAGQDKANP+ATILSV M Sbjct: 245 LFGDILSDEAAVITGSIGMLPSASMGSGGPALFEPIHGSAPDIAGQDKANPIATILSVGM 304 Query: 302 MLRHSLNAEPWAQRVEAAVQRVLDQGLRTADIAAPGTPVIGTKAMGAAVVNAL 354 MLR A ++AAV+RVL +G RT DI G ++GT +MG + + Sbjct: 305 MLRLGFGLAAEADAIDAAVRRVLAEGYRTGDIMENGRTLVGTVSMGNLIAERI 357 Lambda K H 0.320 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 449 Number of extensions: 10 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 358 Length of database: 357 Length adjustment: 29 Effective length of query: 329 Effective length of database: 328 Effective search space: 107912 Effective search space used: 107912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate 208498 DVU2985 (3-isopropylmalate dehydrogenase (TIGR))
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))
../bin/blast/fastacmd -i /tmp/list.30926.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30926.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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