Alignments for a candidate for leuA in Dinoroseobacter shibae DFL-12

Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate 3607175 Dshi_0596 2-isopropylmalate synthase (RefSeq)

Query= BRENDA::Q9JZG1
         (517 letters)



>FitnessBrowser__Dino:3607175
          Length = 525

 Score =  482 bits (1240), Expect = e-140
 Identities = 256/503 (50%), Positives = 346/503 (68%), Gaps = 6/503 (1%)

Query: 2   TQTNRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAVN 61
           T  +RV+IFDTTLRDGEQSPGA MT +EK+ +A  L+++GVDIIEAGF  AS GDF AV+
Sbjct: 5   TDQDRVLIFDTTLRDGEQSPGATMTHDEKLEIAALLDEMGVDIIEAGFPIASDGDFAAVS 64

Query: 62  AIAKTITKSTVCSLSRAIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVI 121
            IAK    S +C L+RA  +DI +  EAV  A + RIHTFI TSP+H      +   ++ 
Sbjct: 65  EIAKNSVNSVICGLARANFKDIDRCWEAVRHARQPRIHTFIGTSPLHRAIP-NLTMDEMA 123

Query: 122 EAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYK 181
           +     V  AR   D+V++S  DA R+E D+L  +    I+AGATTINIPDTVGY+ P +
Sbjct: 124 DRIHDTVTHARNLCDNVQWSPMDATRTEYDYLCRVIEIAIKAGATTINIPDTVGYTAPRE 183

Query: 182 TEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGNA 241
           + +    LIA  P    V ++ HCHNDLG+A AN+LAA+  GARQVECT+NGLGERAGN 
Sbjct: 184 SADLIARLIADVPGAEDVTFATHCHNDLGMATANALAAVDAGARQVECTINGLGERAGNT 243

Query: 242 SVEEIVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESGI 301
           ++EE+VMAL+VR+D+   +T IDT +I+  S+ V+ ++G+ VQ NKAIVG NAF+HESGI
Sbjct: 244 ALEEVVMALRVRNDIMPYQTRIDTRKIMNISRRVAAVSGFAVQFNKAIVGKNAFAHESGI 303

Query: 302 HQDGVLKHRETYEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAFA 361
           HQDG+LK+ ET+EIM  E +G +   L +GK SGR A + KL DLG EL ++  L   F 
Sbjct: 304 HQDGMLKNAETFEIMRPEDIGLSETNLVMGKHSGRAALRAKLKDLGYEL-ADNQLKDVFV 362

Query: 362 RFKELADKKREIFDEDLHALVSDEMGSMNAE--SYKFISQKISTETGEEPRADIVFSIKG 419
           RFK LAD+K+EI+DEDL AL+S+       E  S KF+     TE  +   AD+  SI G
Sbjct: 363 RFKALADRKKEIYDEDLVALMSESSSDPARERLSVKFLRVICGTEAPQS--ADLTLSIDG 420

Query: 420 EEKRASATGSGPVDAIFKAIESVAQSGAALQIYSVNAVTQGTESQGETSVRLARGNRVVN 479
            +K+ +A G GPVDA F A++++    A LQ+Y V+AVT+GT++Q   +VR+    R+V+
Sbjct: 421 VDKQVTAQGDGPVDATFNAVKALFPHTARLQLYQVHAVTEGTDAQATVTVRMEEDGRIVS 480

Query: 480 GQGADTDVLVATAKAYLSALSKL 502
           GQ ADTD +VA+AKAY++AL++L
Sbjct: 481 GQAADTDTVVASAKAYVAALNRL 503


Lambda     K      H
   0.313    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 617
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 525
Length adjustment: 35
Effective length of query: 482
Effective length of database: 490
Effective search space:   236180
Effective search space used:   236180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)

Align candidate 3607175 Dshi_0596 (2-isopropylmalate synthase (RefSeq))
to HMM TIGR00973 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.12152.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12152.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.