Alignments for a candidate for leuC in Dinoroseobacter shibae DFL-12

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate 3607280 Dshi_0695 3-isopropylmalate dehydratase, large subunit (RefSeq)

Query= CharProtDB::CH_024771
         (466 letters)



>FitnessBrowser__Dino:3607280
          Length = 464

 Score =  482 bits (1240), Expect = e-140
 Identities = 250/461 (54%), Positives = 307/461 (66%), Gaps = 10/461 (2%)

Query: 3   KTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFATMD 62
           +TL EKL+ AH V   E+   LL++DRHL+HE  S  AF  L   G  V  P +TFA MD
Sbjct: 5   RTLLEKLWAAHEVTRREDGASLLWVDRHLLHE-GSHHAFAKLAERGLSVAAPAQTFAVMD 63

Query: 63  HNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLPGM 122
           H   T+ +         R  +  L +N +   + L+DL    QGIVHV+GPEQG+TLPG+
Sbjct: 64  HYAPTRDRAAEGATPEIRAMIARLRENAEIHQIRLFDLFDRDQGIVHVIGPEQGLTLPGL 123

Query: 123 TIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITAKD 182
           TI CGDSHT+THGAFGALAFGIG +EV HVLATQT+ Q R KT+++   G+  PG+ AKD
Sbjct: 124 TINCGDSHTSTHGAFGALAFGIGATEVAHVLATQTVWQTRPKTLRLRFDGRLGPGVGAKD 183

Query: 183 IVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFNY 242
           + LA I   GS G  GH +E+ GEA+R LSMEGRMTLCN++IE GAK GL+APDETTF Y
Sbjct: 184 LALAWIAALGSDGARGHAIEYTGEAVRRLSMEGRMTLCNLSIEGGAKLGLIAPDETTFAY 243

Query: 243 VKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISVND 302
           ++GR HAP G D+  AV  W  L++DE A FD   TL    I+P VTWGT P Q I V +
Sbjct: 244 LRGRPHAPDGADWGRAVEDWAALRSDEDAVFDREETLDCAAIAPVVTWGTRPDQAIPVTE 303

Query: 303 NIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAEIA 362
           N+P         E +    AL YMGL+ G P+    +D+VFIGSCTN RIEDLRAAA + 
Sbjct: 304 NLPRG-------EGSEVNSALTYMGLRAGAPIAGTPVDQVFIGSCTNGRIEDLRAAAAVL 356

Query: 363 KGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPGE 422
            GR+    V   V PGS  +KAQAE EGL +IFI AG EW   GC+MC+ MN D + PG+
Sbjct: 357 AGRRAR--VPGQVTPGSARIKAQAEQEGLAEIFIAAGLEWTEAGCAMCVGMNGDLVAPGK 414

Query: 423 RCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIR 463
           RCAS++NRNF GRQG G RTHL+SPAM AAAAVTG   D+R
Sbjct: 415 RCASSTNRNFRGRQGPGARTHLMSPAMVAAAAVTGEITDVR 455


Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 717
Number of extensions: 31
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 464
Length adjustment: 33
Effective length of query: 433
Effective length of database: 431
Effective search space:   186623
Effective search space used:   186623
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate 3607280 Dshi_0695 (3-isopropylmalate dehydratase, large subunit (RefSeq))
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.21379.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21379.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.