Alignments for a candidate for argG in Azospirillum brasilense Sp245

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate AZOBR_RS00785 AZOBR_RS00785 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>FitnessBrowser__azobra:AZOBR_RS00785
          Length = 411

 Score =  513 bits (1322), Expect = e-150
 Identities = 256/395 (64%), Positives = 305/395 (77%), Gaps = 4/395 (1%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIAL-- 59
           K+VLAYSGGLDTS+ILKWL+ETY+ EV+ FTAD+GQGEE+E AR+KA   G         
Sbjct: 11  KVVLAYSGGLDTSVILKWLQETYQCEVVTFTADLGQGEELEPARKKAELLGIKPENIFID 70

Query: 60  DLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKG 119
           DL+EEFVRDFVFPM RA  +YEG YLLGTSIARPLIAK  + IA + GA+A+AHGATGKG
Sbjct: 71  DLREEFVRDFVFPMFRANTLYEGTYLLGTSIARPLIAKRQIEIANQVGADAVAHGATGKG 130

Query: 120 NDQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQ--EKPYSMDAN 177
           NDQVRFEL  YAL+PDIK+IAPWREW    R  +I YAE + IP+   +  E PYS DAN
Sbjct: 131 NDQVRFELGYYALRPDIKIIAPWREWDLSSRTRLIDYAEKNQIPIAKDKRGEAPYSTDAN 190

Query: 178 LLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAA 237
           LLHISYEG  LEDPW EP + M+  +  PE+APD P YVEVEF  GD VA++G+ LSPAA
Sbjct: 191 LLHISYEGKALEDPWVEPFEDMYTRSVAPEKAPDTPTYVEVEFKRGDAVAIDGKALSPAA 250

Query: 238 LLQRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQ 297
           LL  LN +GG +G+GR+D+VENR+VGMKSRGVYETPGGTIL  A RA+ES+TLDR   H 
Sbjct: 251 LLTELNRLGGENGIGRLDLVENRYVGMKSRGVYETPGGTILLAAHRAMESITLDRGAGHL 310

Query: 298 RDMLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSL 357
           +D L P+YAEL+Y G+W++PER ALQA  D     V GV RLKL+KGNV VVGRK+P SL
Sbjct: 311 KDELMPRYAELIYCGYWFSPERLALQALIDQTQEPVNGVVRLKLFKGNVTVVGRKSPNSL 370

Query: 358 YRQDLVSFDEAGGYDQKDAEGFIKIQALRLRVRAL 392
           YR D V+F+E   Y+QKDAEGFIK+ ALRLR+ A+
Sbjct: 371 YRMDYVTFEEDSVYNQKDAEGFIKLNALRLRLGAM 405


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 507
Number of extensions: 11
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 411
Length adjustment: 31
Effective length of query: 369
Effective length of database: 380
Effective search space:   140220
Effective search space used:   140220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS00785 AZOBR_RS00785 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.7062.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7062.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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