Alignments for a candidate for hisF in Azospirillum brasilense Sp245

Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate AZOBR_RS01685 AZOBR_RS01685 imidazole glycerol phosphate synthase

Query= BRENDA::Q5NMD6
         (255 letters)



>FitnessBrowser__azobra:AZOBR_RS01685
          Length = 265

 Score =  342 bits (876), Expect = 6e-99
 Identities = 168/247 (68%), Positives = 203/247 (82%), Gaps = 1/247 (0%)

Query: 6   RIIPCLDVADGRVVKGVNFTDLMDAGDPVEQAKVYDAAGADELCFLDISASHEGRGTMLD 65
           R+IPCLDV DGRVVKGVNF DL+DAGDPVEQA+VYD  GADEL FLDI+ASHE R T+ D
Sbjct: 5   RVIPCLDVKDGRVVKGVNFVDLIDAGDPVEQARVYDREGADELTFLDITASHENRDTIYD 64

Query: 66  VVARTAEVCFMPLTVGGGVRQVEDARALLLAGADKVAVNSAAVARPELVAEIADRFGAQC 125
           VV RTAE  FMPLTVGGGVR VED R LLLAGADKV++N+AA+ RPE V E A++FGAQC
Sbjct: 65  VVRRTAEQVFMPLTVGGGVRTVEDIRKLLLAGADKVSINTAAIHRPEFVQEAAEKFGAQC 124

Query: 126 VVAAIDARR-NGDHWEVYTHGGRRPTGINALDHALNLTRLGAGEILLTSMDKDGTRDGYD 184
           +V AIDA++     WE++THGGR+ TGI+A++ A  +   GAGEILLTSMD+DGT+ G+D
Sbjct: 125 IVVAIDAKQVEPGRWEIFTHGGRKATGIDAIEWAKRMESYGAGEILLTSMDRDGTKSGFD 184

Query: 185 LELTRLVADSVPVPVIASGGVGNLDHMVEGVTKGHASALLAASIFHFGQYSLAEAHEALA 244
           L LTR VAD + +PVIASGGVG LDH+VEG+ +GHA+A+LAASIFHFG Y++ +A  ALA
Sbjct: 185 LALTRKVADGLRIPVIASGGVGTLDHLVEGIREGHATAVLAASIFHFGTYTIGQAKAALA 244

Query: 245 KAGLTVR 251
            AG+ VR
Sbjct: 245 DAGIPVR 251


Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 273
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 265
Length adjustment: 24
Effective length of query: 231
Effective length of database: 241
Effective search space:    55671
Effective search space used:    55671
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate AZOBR_RS01685 AZOBR_RS01685 (imidazole glycerol phosphate synthase)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.4154.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4154.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.