Alignments for a candidate for aroE in Azospirillum brasilense Sp245

Align shikimate dehydrogenase (EC 1.1.1.25) (characterized)
to candidate AZOBR_RS01765 AZOBR_RS01765 shikimate 5-dehydrogenase

Query= reanno::Caulo:CCNA_00003
         (285 letters)



>FitnessBrowser__azobra:AZOBR_RS01765
          Length = 279

 Score =  203 bits (516), Expect = 4e-57
 Identities = 113/264 (42%), Positives = 147/264 (55%)

Query: 5   ITGAAIVGGVCGQPIKHSMSPVIHNAWIAAAGLDAAYVPFAPAADRFETFVDGLRGGAVR 64
           I+G A + GV G PI HS SP +H  W+   G+D AYVP A   DR E  +  L     R
Sbjct: 3   ISGKATLAGVMGWPIGHSRSPRLHGYWLEQYGIDGAYVPLAVPPDRIEQAIRALPALGFR 62

Query: 65  GLNVTIPFKERALAVADTASDLARMAGAANLLVFNEDGSVHADNTDGPGLLGAIAIQAPG 124
           G NVT+P KE A    D     A+  GA N +V  E+GS+   NTDG G +  +   APG
Sbjct: 63  GCNVTVPHKEAACRTVDRLDATAKRMGAVNTIVVGENGSLEGRNTDGFGFIENLRSGAPG 122

Query: 125 FDVTAAPVVILGAGGAARGAVAALLLAGAPRIAVVNRTVARAQDLADTFGEKVVAKGEDA 184
           +     P +++GAGGAAR  VA+LL  GAPR+ +VNRT ARA +LA   G  +      +
Sbjct: 123 WKAADGPALVIGAGGAARAVVASLLDEGAPRVWLVNRTRARADELAADIGGAIETADWVS 182

Query: 185 LPALLPEAGLIINATSLGLGGGAGPSADLTLTPKTAVVMDMVYKPLRTEFLRRAEAAGRR 244
              LL  A L++N T+ G+ G      +L   P +AVV D+VY PL T  L  A+A G R
Sbjct: 183 RETLLEGAALVVNTTTQGMAGQPPLELNLRALPGSAVVTDIVYTPLMTPLLTAAQARGNR 242

Query: 245 TVDGLEMLLRQAIPTFETIYGQAP 268
            VDG+ MLL QA P F   +G+ P
Sbjct: 243 VVDGVGMLLHQARPGFAAWFGREP 266


Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 214
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 279
Length adjustment: 26
Effective length of query: 259
Effective length of database: 253
Effective search space:    65527
Effective search space used:    65527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate AZOBR_RS01765 AZOBR_RS01765 (shikimate 5-dehydrogenase)
to HMM TIGR00507 (aroE: shikimate dehydrogenase (EC 1.1.1.25))

Software error:

../bin/blast/fastacmd -i /tmp/list.11035.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11035.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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