Align shikimate dehydrogenase (EC 1.1.1.25) (characterized)
to candidate AZOBR_RS01765 AZOBR_RS01765 shikimate 5-dehydrogenase
Query= reanno::Caulo:CCNA_00003 (285 letters) >FitnessBrowser__azobra:AZOBR_RS01765 Length = 279 Score = 203 bits (516), Expect = 4e-57 Identities = 113/264 (42%), Positives = 147/264 (55%) Query: 5 ITGAAIVGGVCGQPIKHSMSPVIHNAWIAAAGLDAAYVPFAPAADRFETFVDGLRGGAVR 64 I+G A + GV G PI HS SP +H W+ G+D AYVP A DR E + L R Sbjct: 3 ISGKATLAGVMGWPIGHSRSPRLHGYWLEQYGIDGAYVPLAVPPDRIEQAIRALPALGFR 62 Query: 65 GLNVTIPFKERALAVADTASDLARMAGAANLLVFNEDGSVHADNTDGPGLLGAIAIQAPG 124 G NVT+P KE A D A+ GA N +V E+GS+ NTDG G + + APG Sbjct: 63 GCNVTVPHKEAACRTVDRLDATAKRMGAVNTIVVGENGSLEGRNTDGFGFIENLRSGAPG 122 Query: 125 FDVTAAPVVILGAGGAARGAVAALLLAGAPRIAVVNRTVARAQDLADTFGEKVVAKGEDA 184 + P +++GAGGAAR VA+LL GAPR+ +VNRT ARA +LA G + + Sbjct: 123 WKAADGPALVIGAGGAARAVVASLLDEGAPRVWLVNRTRARADELAADIGGAIETADWVS 182 Query: 185 LPALLPEAGLIINATSLGLGGGAGPSADLTLTPKTAVVMDMVYKPLRTEFLRRAEAAGRR 244 LL A L++N T+ G+ G +L P +AVV D+VY PL T L A+A G R Sbjct: 183 RETLLEGAALVVNTTTQGMAGQPPLELNLRALPGSAVVTDIVYTPLMTPLLTAAQARGNR 242 Query: 245 TVDGLEMLLRQAIPTFETIYGQAP 268 VDG+ MLL QA P F +G+ P Sbjct: 243 VVDGVGMLLHQARPGFAAWFGREP 266 Lambda K H 0.319 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 214 Number of extensions: 8 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 285 Length of database: 279 Length adjustment: 26 Effective length of query: 259 Effective length of database: 253 Effective search space: 65527 Effective search space used: 65527 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate AZOBR_RS01765 AZOBR_RS01765 (shikimate 5-dehydrogenase)
to HMM TIGR00507 (aroE: shikimate dehydrogenase (EC 1.1.1.25))
../bin/blast/fastacmd -i /tmp/list.11035.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11035.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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