Alignments for a candidate for leuC in Azospirillum brasilense Sp245

Align 3-isopropylmalate dehydratase large subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 (characterized)
to candidate AZOBR_RS03545 AZOBR_RS03545 isopropylmalate isomerase

Query= SwissProt::P15717
         (466 letters)



>FitnessBrowser__azobra:AZOBR_RS03545
          Length = 467

 Score =  642 bits (1657), Expect = 0.0
 Identities = 318/463 (68%), Positives = 372/463 (80%)

Query: 3   KTLYEKLFDAHVVFEAPNETPLLYIDRHLVHEVTSPQAFDGLRAHHRPVRQPGKTFATMD 62
           +TL++K++D+HVV    + T +LYIDRHLVHEVTSPQAF+GLR   RPVR+P  T A  D
Sbjct: 5   RTLFDKIWDSHVVHRQDDGTCILYIDRHLVHEVTSPQAFEGLRLAGRPVRRPEATLAVPD 64

Query: 63  HNVSTQTKDINASGEMARIQMQELIKNCNEFGVELYDLNHPYQGIVHVMGPEQGVTLPGM 122
           HNV T  +      E +RIQ++ L KN  +FGV  + ++   QGIVH++GPEQG TLPG 
Sbjct: 65  HNVPTTDRSKGIVEEESRIQVETLDKNARDFGVRYFPMDDVRQGIVHIVGPEQGFTLPGA 124

Query: 123 TIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVTGNAAPGITAKD 182
           TIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTL Q  AK M + V G    G+TAKD
Sbjct: 125 TIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLLQKPAKNMLVRVDGELPAGVTAKD 184

Query: 183 IVLAIIGKTGSAGGTGHVVEFCGDAIRALSMEGRMTLCNMAIEMGAKAGLVAPDETTFNY 242
           IVLAIIG+ G+AGGTGHV+EF GDAIR LSMEGRMT+CNMAIE GA+AGL+APDE TF Y
Sbjct: 185 IVLAIIGRIGTAGGTGHVIEFAGDAIRGLSMEGRMTVCNMAIEGGARAGLIAPDEKTFEY 244

Query: 243 VKGRLHAPKGRDFDEAVEYWKTLKTDDGATFDTVVALRAEEIAPQVTWGTNPGQVISVTD 302
           VKGR  APK   +++AVEYWKTL +D+GA +DT V L A +I PQVTWGT+P  V+ +T 
Sbjct: 245 VKGRALAPKAGAWEQAVEYWKTLPSDEGAVYDTTVVLNAADIVPQVTWGTSPEDVLPITA 304

Query: 303 IIPDPASFSDPVERASAEKALAYMGLQPGVPLTDVAIDKVFIGSCTNSRIEDLRAAAEVA 362
            +P+PA  +D  +RA+ E++LAYMGL+PG  LTDV +D VFIGSCTN RIEDLRAAA +A
Sbjct: 305 TVPNPADVADAGKRAAVERSLAYMGLEPGQKLTDVKVDTVFIGSCTNGRIEDLRAAAVIA 364

Query: 363 KGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPGE 422
           +GRKVA GV+ALVVPGSG VK QAE EGLDKIF EAGFEWR PGCSMCLAMN DRL+PGE
Sbjct: 365 QGRKVAEGVRALVVPGSGLVKDQAEEEGLDKIFTEAGFEWREPGCSMCLAMNADRLSPGE 424

Query: 423 RCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRSI 465
           R ASTSNRNFEGRQGRGGRTHL+SPAMAAAAAVTGH  D+RS+
Sbjct: 425 RSASTSNRNFEGRQGRGGRTHLLSPAMAAAAAVTGHLTDVRSL 467


Lambda     K      H
   0.318    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 817
Number of extensions: 30
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 467
Length adjustment: 33
Effective length of query: 433
Effective length of database: 434
Effective search space:   187922
Effective search space used:   187922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate AZOBR_RS03545 AZOBR_RS03545 (isopropylmalate isomerase)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.8579.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8579.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.