Alignments for a candidate for cysE in Azospirillum brasilense Sp245

Align Serine acetyltransferase; SAT; EC 2.3.1.30 (characterized)
to candidate AZOBR_RS05825 AZOBR_RS05825 serine O-acetyltransferase

Query= SwissProt::Q06750
         (217 letters)



>FitnessBrowser__azobra:AZOBR_RS05825
          Length = 276

 Score =  212 bits (540), Expect = 5e-60
 Identities = 107/212 (50%), Positives = 145/212 (68%), Gaps = 5/212 (2%)

Query: 3   FRMLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHALYKRKFYFLARLISQVSR 62
           F+ L+E+ID +  +DPAARS  EV L Y G HAI  HR+A   + R+++ +AR +SQ++R
Sbjct: 21  FKHLREEIDGIMARDPAARSRAEVALCYPGFHAIVLHRVARYCWDRRWHLMARAVSQIAR 80

Query: 63  FFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPTIK 122
             TGIEIHPGATIGRRFFIDHGMGVVIGET EIG++V ++ GVTLGGT   +GKRHPT++
Sbjct: 81  ALTGIEIHPGATIGRRFFIDHGMGVVIGETAEIGDDVMLYHGVTLGGTSLNQGKRHPTLE 140

Query: 123 DDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVV-----VQNGKKVR 177
              ++  GAKVLG+IT+G G+++GA +VV+ DV     VVGIP + V     V+  K + 
Sbjct: 141 SGVIVGAGAKVLGAITIGRGARVGANAVVVADVAPGIAVVGIPAKAVVTRDRVETQKFMP 200

Query: 178 RDLNHQDLPDPVADRFKSLEQQILELKAELED 209
                 D+PDPVA     L  Q+  L+  +E+
Sbjct: 201 YGTPCGDIPDPVARALNGLLDQVSTLRRRVEE 232


Lambda     K      H
   0.323    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 217
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 276
Length adjustment: 24
Effective length of query: 193
Effective length of database: 252
Effective search space:    48636
Effective search space used:    48636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)

Align candidate AZOBR_RS05825 AZOBR_RS05825 (serine O-acetyltransferase)
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.8136.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8136.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.