Alignments for a candidate for trpD_1 in Azospirillum brasilense Sp245

Align Anthranilate synthase component 2; AS; ASII; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component; EC 4.1.3.27 (characterized)
to candidate AZOBR_RS06415 AZOBR_RS06415 anthranilate synthase subunit I

Query= SwissProt::P26922
         (196 letters)



>FitnessBrowser__azobra:AZOBR_RS06415
          Length = 737

 Score =  136 bits (343), Expect = 8e-37
 Identities = 83/195 (42%), Positives = 105/195 (53%), Gaps = 2/195 (1%)

Query: 2   LLLIDNYDSFTYNLVHYLGELGAELDVRRNDSLTVEEAMALRPEGIVLSPGPCDPDKAGI 61
           +LL+D+ DSF + L  YL + GA +   R+       A   RP+ +VLSPGP  P    +
Sbjct: 539 VLLVDHDDSFVHTLADYLRQTGASVMTLRHGHARAALAER-RPDLVVLSPGPGRPADFNV 597

Query: 62  CLPLIDAAAKAAVPLMGVCLGHQAIGQPFGGTVVRAPVPMHGKVDRMFHQGRGVLKDLPS 121
               IDAA    +P+ GVCLG Q + + FGG +   P P+HGK   +   G  +   LP 
Sbjct: 598 A-GTIDAALALGLPVFGVCLGLQGMVERFGGALDVLPEPVHGKATEVRVLGGALFAGLPE 656

Query: 122 PFRATRYHSLIVERATLPACLEVTGETEDGLIMALSHRELPIHGVQFHPESIESEHGHKI 181
             R  RYHSL+  R  LPA L VT ET DGL+MA+ HR LP+  VQFHPESI S  G   
Sbjct: 657 RMRVGRYHSLVARRDRLPADLTVTAETADGLVMAVEHRRLPLAAVQFHPESILSLDGGAG 716

Query: 182 LENFLNTTRRLETAA 196
           L    N   RL   A
Sbjct: 717 LALLGNVMDRLAAGA 731


Lambda     K      H
   0.321    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 384
Number of extensions: 19
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 737
Length adjustment: 30
Effective length of query: 166
Effective length of database: 707
Effective search space:   117362
Effective search space used:   117362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS06415 AZOBR_RS06415 (anthranilate synthase subunit I)
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.3285.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3285.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.