Alignments for a candidate for glnA in Azospirillum brasilense Sp245

Align Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 (characterized)
to candidate AZOBR_RS07095 AZOBR_RS07095 glutamine synthetase

Query= SwissProt::Q3V5W6
         (468 letters)



>FitnessBrowser__azobra:AZOBR_RS07095
          Length = 469

 Score =  608 bits (1567), Expect = e-178
 Identities = 296/467 (63%), Positives = 359/467 (76%), Gaps = 2/467 (0%)

Query: 1   MSKSVQLIKDHDVKWIDLRFTDTKGTQHHVTMPARDALEDDFFEVGKMFDGSSIAGWKGI 60
           +SK   LIK+HDVK++DLRFTD +G  HH        +++D FE G MFDGSSIAGWK I
Sbjct: 4   ISKVFDLIKEHDVKYVDLRFTDPRGKLHHTAQHV-STIDEDVFEDGIMFDGSSIAGWKAI 62

Query: 61  EASDMILLPDDDTAVLDPFTEDATLILVCDIIEPSTMQGYDRDPRAIAHRAEEYLKTTGI 120
             SDMIL  D  TAV+DPF+   TL ++CD+ EPST Q Y R PR IA  AE+Y+ + GI
Sbjct: 63  NESDMILQLDPTTAVMDPFSAQPTLNILCDVYEPSTGQPYARCPRGIAKAAEKYMASAGI 122

Query: 121 GDTVFAGPEPEFFIFDEVKFKSDISGSMFKIYSEQGSWMSDQDIEGGNKGHRPGVKGGYF 180
           GDT + GPE EFF+FD+VKFK +++   ++  SE+G + SD+D E GN GHRPGVKGGYF
Sbjct: 123 GDTAYFGPEAEFFVFDDVKFKVEMNKVSYEFDSEEGPYTSDKDYEDGNLGHRPGVKGGYF 182

Query: 181 PVPPFDHDHEIRTAMCNALEEMGQTVEVHHHEVATAGQNEIGVKFNTLVKKADEVQTLKY 240
           PV P D   ++R  M + L EMG  VE HHHEVA A Q+E+G+KF+TLV+  D +Q  KY
Sbjct: 183 PVAPVDSGSDLRAEMLSVLAEMGVPVEKHHHEVA-ASQHELGIKFDTLVRTGDNMQYYKY 241

Query: 241 VVHNVADAYGRTATFMPKPLYGDNGSGMHVHMSIAKDGKNTFAGEGYAGLSETALYFIGG 300
           VVHNVA AYG+TATFMPKP++GDNGSGMH+H SI K+G+  FAG  YA LSE ALY+IGG
Sbjct: 242 VVHNVAHAYGKTATFMPKPVFGDNGSGMHMHQSIWKEGQPLFAGNQYADLSELALYYIGG 301

Query: 301 IIKHGKALNGFTNPATNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVNSPRGRRIEARF 360
           IIKH KALN FTNP TNSYKRLVPG+EAPV+LAYSARNRSAS RIPYV SP+G+R+E RF
Sbjct: 302 IIKHAKALNAFTNPTTNSYKRLVPGYEAPVLLAYSARNRSASCRIPYVASPKGKRVEVRF 361

Query: 361 PDPAANPYLAFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEE 420
           PDP+ANPYLAFAALLMAGLDGIQNKIHPG+A DKNLYDLP EE  ++P VCGSL+EAL+ 
Sbjct: 362 PDPSANPYLAFAALLMAGLDGIQNKIHPGEAMDKNLYDLPAEELAKVPTVCGSLREALDS 421

Query: 421 LDKGRAFLTKGGVFSDDFIDAYIALKSEEEIKVRTFVHPLEYELYYS 467
           L    AFL KG VF+ D I++YI L++EE +   T  HP+EY++YYS
Sbjct: 422 LKADSAFLQKGDVFTKDMIESYIDLRTEELLAFETMPHPIEYKMYYS 468


Lambda     K      H
   0.318    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 762
Number of extensions: 28
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 469
Length adjustment: 33
Effective length of query: 435
Effective length of database: 436
Effective search space:   189660
Effective search space used:   189660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate AZOBR_RS07095 AZOBR_RS07095 (glutamine synthetase)
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.19880.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19880.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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