Alignments for a candidate for trpE in Azospirillum brasilense Sp245

Align Anthranilate synthase component 1; AS; ASI; EC 4.1.3.27 (characterized)
to candidate AZOBR_RS07490 AZOBR_RS07490 anthranilate synthase subunit I

Query= SwissProt::P20579
         (493 letters)



>FitnessBrowser__azobra:AZOBR_RS07490
          Length = 503

 Score =  399 bits (1025), Expect = e-115
 Identities = 235/485 (48%), Positives = 307/485 (63%), Gaps = 33/485 (6%)

Query: 24  LADFDTPLSIYLKLAD-QPNSYLLESVQ--GGEKWGRYSMIGLPSRTVMRVHGYHVSI-- 78
           ++D +TP+S Y+KLAD +P  +L ES +   G +  RYS+IG     V R       +  
Sbjct: 27  VSDLETPVSAYMKLADGRPFGFLFESAERGAGSRRDRYSVIGFKPDLVWRCRRDRAEVNR 86

Query: 79  --LHDGVEVESHDVEDPLAFVESFKDRYKVADIP-GLPRFNGGLVGYFGYDCVRYVEKRL 135
             LHD    E  D   PL  + +  +  ++ D+P  LP    GL GY  YD VR +E+  
Sbjct: 87  NALHDRDAYEPIDAA-PLESLRALINESRI-DLPDALPPMAAGLFGYLTYDMVRLMERL- 143

Query: 136 GVSPNPDPLGVPDILLMVSDAVVVFDNLAGKMHAIVLVDPAE----EQAFEQGQARLQGL 191
               NPD LG+PD +L     V +FD+    +  +  V P        A+   + RL   
Sbjct: 144 -PDDNPDELGIPDAILSRPSIVAIFDSHTDSVTLVTPVWPKPGVDGAAAYGDARERLMDA 202

Query: 192 LETLRQPITPRR------GLDLSGPQAAEPEFRSSYTREDYENAVGRIKEYILAGDCMQV 245
           +  L +P+  RR      GL L+        + S+ TRE+Y   V R KEYI AGD  QV
Sbjct: 203 VADLERPLPYRREPRTKDGLPLA--------WTSNTTREEYHAIVERAKEYIRAGDIFQV 254

Query: 246 VPSQRMSIDFKAAPIDLYRALRCFNPTPYMYFFNFGDFHVVGSSPEVLVRVEDNLVTVRP 305
           VPSQR+   FK +P+ LYR LR  NP+P+++  +FG+  VVGSSPE+LVRV D  VTVRP
Sbjct: 255 VPSQRIRFPFKPSPLALYRTLRRLNPSPFLFHCDFGELSVVGSSPEILVRVRDGNVTVRP 314

Query: 306 IAGTRPRGATEEADRALEDDLLSDDKEIAEHLMLIDLGRNDVGRVSSTGSVRLTEKMVIE 365
           IAGTR RGAT   D+AL +DLLSD KE+AEHLML+DLGRNDVGRV+ TG+V++T+KM++E
Sbjct: 315 IAGTRKRGATAAEDQALAEDLLSDPKELAEHLMLLDLGRNDVGRVARTGTVKVTQKMIVE 374

Query: 366 RYSNVMHIVSNVAGQLREGLTAMDALRAILPAGTLSGAPKIRAMEIIDELEPVKRGVYGG 425
            YS+VMHIVSNV G L     A+DAL A  PAGT+SGAPK+RAM+IIDELE  +RGVY G
Sbjct: 375 LYSHVMHIVSNVEGDLDPKHDALDALIAGFPAGTVSGAPKVRAMQIIDELEKARRGVYAG 434

Query: 426 AVGYFAWNGNMDTAIAIRTAVINDGELHVQAGGGIVADSVPALEWEETINKRRAMFRAVA 485
            VGYF  +G MDT IA+RTAV+ DG ++VQAGGG+VADS P  E++ET+NK  A+ RA  
Sbjct: 435 CVGYFGASGAMDTCIALRTAVLKDGMMYVQAGGGVVADSDPEAEYQETVNKSMALIRA-- 492

Query: 486 LAEQT 490
            AE+T
Sbjct: 493 -AEET 496


Lambda     K      H
   0.320    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 718
Number of extensions: 30
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 503
Length adjustment: 34
Effective length of query: 459
Effective length of database: 469
Effective search space:   215271
Effective search space used:   215271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate AZOBR_RS07490 AZOBR_RS07490 (anthranilate synthase subunit I)
to HMM TIGR00564 (trpE: anthranilate synthase component I (EC 4.1.3.27))

Software error:

../bin/blast/fastacmd -i /tmp/list.4511.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4511.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.