Alignments for a candidate for thrB in Azospirillum brasilense Sp245

Align homoserine kinase (EC 2.7.1.39) (characterized)
to candidate AZOBR_RS10500 AZOBR_RS10500 homoserine kinase

Query= reanno::Korea:Ga0059261_3253
         (319 letters)



>FitnessBrowser__azobra:AZOBR_RS10500
          Length = 327

 Score =  278 bits (710), Expect = 2e-79
 Identities = 139/310 (44%), Positives = 197/310 (63%), Gaps = 2/310 (0%)

Query: 1   MAVYTQVSAEALAGFLARYDVGELVSAKGIAEGVENSNYLVETTRDRFILTLYEKRVEAA 60
           MAVYT+V+ + L  F+A+YD+G ++S KGIAEGVENSN+L+ T R  +ILTLYEKR    
Sbjct: 1   MAVYTEVTDDELNAFIAQYDLGAVLSCKGIAEGVENSNFLLVTERGPYILTLYEKRTRRE 60

Query: 61  DLPYFMGLLDHLAAKGLPVPPAIKDRGGVEIQELNGRPACLIKFLSGISLSHPTPAQARA 120
           DLP+F+GL++HLA KG+  P  ++   G+ ++EL GRPA ++ FL+G+     TP     
Sbjct: 61  DLPFFLGLMEHLADKGIACPLPVQGTDGLALRELAGRPAVIVTFLAGMWPRRITPHHCAE 120

Query: 121 AGEAMAQMHRAVADFPLDRPNSMGVDTWQPLFEKCGHSLDQIVPGLYDDLGFAIARVVPA 180
            G A+A++H AVADF ++RPN++ +D W+ L  KC    D++   L   L   +A +   
Sbjct: 121 LGTALARLHLAVADFRMERPNALSLDGWKDLAGKCAPRADEVARDLRATLEAELAALEAN 180

Query: 181 WTRNDFDRCAIHADLFPDNVLMRGDQVTGLIDFYFACTDIRVYDLAVMHSAWSFDAHGRN 240
           W         IHADLFPDNV  RGD ++GLIDFYFAC D   YD+A+  +AW F+  G +
Sbjct: 181 WPAG-LPSGVIHADLFPDNVFFRGDGLSGLIDFYFACNDFLAYDIAICMNAWCFEVDG-S 238

Query: 241 YDPAVGDALIAGYEASFPLTEVERAAFPTLAAGACIRFSLSRAWDWLNTPADALVMRKDP 300
           ++      L+  Y+   PL+  E AA P L  G+ +RF L+R +DWLN P  A V  KDP
Sbjct: 239 FNATKARMLLTSYQKVRPLSPAEMAALPWLCRGSALRFLLTRLYDWLNHPPGAFVRPKDP 298

Query: 301 LAYVRRLKHY 310
           L Y+R+L+ +
Sbjct: 299 LEYLRKLRFH 308


Lambda     K      H
   0.323    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 285
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 327
Length adjustment: 28
Effective length of query: 291
Effective length of database: 299
Effective search space:    87009
Effective search space used:    87009
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate AZOBR_RS10500 AZOBR_RS10500 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.30260.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30260.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.