Alignments for a candidate for thrC in Azospirillum brasilense Sp245

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate AZOBR_RS10545 AZOBR_RS10545 threonine synthase

Query= BRENDA::Q8YFS0
         (463 letters)



>FitnessBrowser__azobra:AZOBR_RS10545
          Length = 470

 Score =  523 bits (1347), Expect = e-153
 Identities = 265/465 (56%), Positives = 337/465 (72%), Gaps = 2/465 (0%)

Query: 1   MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLT 60
           +KYVSTRG+APVLGF + LLAGLARDGGLY+P  +PQF+A++IRA+RG  Y E+A+ V+ 
Sbjct: 1   LKYVSTRGQAPVLGFEEVLLAGLARDGGLYVPDSWPQFSADEIRAMRGLPYSEIAVRVML 60

Query: 61  PFTGGEIPAADFERMVREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLLA 120
           PF GG I   DF  +V++AY +F H AV PLVQ D   +V+ELFHGPTLAFKDVA+QLL 
Sbjct: 61  PFLGGAIAEDDFRAIVKDAYASFDHAAVVPLVQLDQRTWVMELFHGPTLAFKDVALQLLG 120

Query: 121 RMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSS 180
           R+ D+VLA+RG+R TIVGATSGDTG AAIEA   R N DIFIL P GR S VQ+RQMTS 
Sbjct: 121 RLFDHVLAKRGKRVTIVGATSGDTGSAAIEACRDRQNVDIFILHPKGRTSEVQRRQMTSV 180

Query: 181 GFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARIMPQVVYYFTAALS 240
              NVH +++ G FDDCQ+LVK +FND+ F D + LS VNSINWARIM Q+VYYF AA++
Sbjct: 181 LSDNVHNIALHGTFDDCQDLVKALFNDMAFRDKMGLSAVNSINWARIMAQIVYYFAAAVA 240

Query: 241 LGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGAYEMRGV 300
           LGAPDR V+FTVPTGNFG+++A Y A+ MGLP+E+L++ +N NDIL+R   SG      V
Sbjct: 241 LGAPDRKVAFTVPTGNFGNVYAAYGARAMGLPVERLVVGSNANDILARFFASGTMSAAPV 300

Query: 301 AQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSA 360
             T SPSMDIQISSNFERLLF+  GRD AAV+  M G +  G F +++  L+   + F+A
Sbjct: 301 VPTLSPSMDIQISSNFERLLFDLLGRDGAAVQAAMDGFRAEGKFAVTDAQLAEAHAIFAA 360

Query: 361 GRSTVDETAATIESVLSK-DGYLLDPHSAIGV-KVAREKASGTAPMVVLATAHPAKFPDA 418
           GR+    T   I+ V  K  GY +DPH+A+G+   A      + P+VV+ATAHPAKFPDA
Sbjct: 361 GRADDARTMDVIKEVWEKTGGYQVDPHTAVGIHSAATAPVDPSVPVVVMATAHPAKFPDA 420

Query: 419 VKAACGVEPQLPAWLCDLMQRKESFTVLHNELKIVEEYVRHHSRA 463
           V+ A G  P LP  L DL +R+E  + L N++  V+E+V   +RA
Sbjct: 421 VETATGRRPVLPPRLADLYEREERLSELPNDVAAVQEFVVARARA 465


Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 605
Number of extensions: 23
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 470
Length adjustment: 33
Effective length of query: 430
Effective length of database: 437
Effective search space:   187910
Effective search space used:   187910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate AZOBR_RS10545 AZOBR_RS10545 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.1610.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1610.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.