Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate AZOBR_RS12895 AZOBR_RS12895 carbamoyl phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>FitnessBrowser__azobra:AZOBR_RS12895
Length = 1083
Score = 1273 bits (3294), Expect = 0.0
Identities = 677/1068 (63%), Positives = 800/1068 (74%), Gaps = 16/1068 (1%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKRTDIKSI I+GAGPIVIGQACEFDYSG QACKALREEG+RVILVNSNPATIMTDP +
Sbjct: 1 MPKRTDIKSICIIGAGPIVIGQACEFDYSGVQACKALREEGFRVILVNSNPATIMTDPGL 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
ADATYIEPI VV KI+EKERPDA+LPTMGGQTALN A+ L G LE GV MIGA
Sbjct: 61 ADATYIEPITPAVVAKILEKERPDALLPTMGGQTALNTAMALSDDGTLERLGVEMIGAKR 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
D I KAEDR F AM K+GLE+ RS + M+EA VG P IIRPSFT+ G+GGG
Sbjct: 121 DVIAKAEDRILFRDAMDKLGLESPRSRLVRNMQEATEALEFVGLPAIIRPSFTLAGTGGG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
IAYNR EFE+I GL SP E+LI+ES++GWKEYEMEVVRDK DNCIIVC+IEN D M
Sbjct: 181 IAYNRAEFEDIVRGGLRASPVGEVLIEESVLGWKEYEMEVVRDKADNCIIVCAIENIDPM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAP+ TLTDKEYQIMRNAS+AVLREIGVETGGSNVQFAVNP NGRLIVIEM
Sbjct: 241 GVHTGDSITVAPSLTLTDKEYQIMRNASIAVLREIGVETGGSNVQFAVNPANGRLIVIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATGFPIAK+AAKLA+GYTLDEL NDIT G TPASFEP+IDYVVTK+P
Sbjct: 301 NPRVSRSSALASKATGFPIAKIAAKLAIGYTLDELTNDIT-GTTPASFEPTIDYVVTKMP 359
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGF-DPKVSLDDPE 419
RF FEKFAG LTT MKSVGE M+IGRT QES+QKALR +E G TGF + ++ D
Sbjct: 360 RFTFEKFAGTEPLLTTSMKSVGEAMSIGRTFQESVQKALRSMETGLTGFNEVRIGDSDTP 419
Query: 420 ALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEV 479
IR L DR+ IA AFR G +V V ++ D WFL QI+ +V E+ +
Sbjct: 420 DAAAIRGALARPTPDRLLVIAQAFRHGFTVAEVQQVSKYDPWFLEQIKAIVDREQAIRSG 479
Query: 480 GITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATD 539
G+ A + + LK+ GF+DARLA+LAG E E + R + PV+KR+DTCAAEFA+
Sbjct: 480 GLPTDKAGW-QSLKQMGFSDARLAELAGKSEGEAAEARRAAGVTPVFKRIDTCAAEFASR 538
Query: 540 TAYMYSTYE------EECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG 593
T YMYSTYE ECE++P T+++K+++LGGGPNRIGQGIEFDYCCVHA ALRE G
Sbjct: 539 TPYMYSTYETDGTGAAECESDP-TEKKKVVILGGGPNRIGQGIEFDYCCVHAVYALREAG 597
Query: 594 YETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGV----IVQYGGQTPLK 649
ETIMVNCNPETVSTDYDT+DRLYFEP+T EDV+E+VR+E+ G IVQ+GGQTPLK
Sbjct: 598 IETIMVNCNPETVSTDYDTADRLYFEPLTAEDVIELVRVEQRNGTVLGCIVQFGGQTPLK 657
Query: 650 LARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIG 709
LA ALE AG+P++GTSPDAID AEDRERFQ + +L L QPAN ++E A A IG
Sbjct: 658 LADALEKAGIPILGTSPDAIDLAEDRERFQKLLHQLDLLQPANGLARSLEEAETVAARIG 717
Query: 710 YPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICD 769
+P+V+RPSYVLGGRAMEIV+D A L+RY AV VS PVL+D +L DA+EVDVD + D
Sbjct: 718 FPVVIRPSYVLGGRAMEIVHDMAGLKRYMGNAVKVSGKNPVLIDSYLQDAIEVDVDVVAD 777
Query: 770 GE-MVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNV 828
V I GIMEHIE+AG+HSGDSAC+LP Y+L E + +Q + LA L V GLMNV
Sbjct: 778 ATGQVYIAGIMEHIEEAGIHSGDSACALPPYSLPAETIAEIGRQGEALARALHVVGLMNV 837
Query: 829 QFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYY 888
QFAVK+ VY++EVNPRA+RTVPFV+KATG +AKVAARVMAG+ LA+ + PP+
Sbjct: 838 QFAVKDGTVYILEVNPRASRTVPFVAKATGTAIAKVAARVMAGEKLADFTLNGPT-PPHT 896
Query: 889 SVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLS 948
+VKE V PF +FPGVD +LGPEM+STGEVMG+ FA AFAK+QLG+ T+ G +S
Sbjct: 897 AVKEAVFPFARFPGVDIVLGPEMKSTGEVMGLDHNFALAFAKSQLGAGVTLPVQGTVFIS 956
Query: 949 VREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNG 1008
V+E DK V + KL GF + AT GTA L +AG+ +NKV EG+PHI D + NG
Sbjct: 957 VKERDKPSAVQIGQKLHAMGFRVLATTGTAAALRQAGVPAESINKVVEGQPHIVDAMING 1016
Query: 1009 EYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNA 1056
E +INTT G +A+ DS +RR+AL Y + Y TT+ G A A+ A
Sbjct: 1017 EVHLVINTTDGAQALSDSFSLRRTALTYNLPYYTTMAGARAAVEAIAA 1064
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3118
Number of extensions: 127
Number of successful extensions: 18
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1083
Length adjustment: 46
Effective length of query: 1027
Effective length of database: 1037
Effective search space: 1064999
Effective search space used: 1064999
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate AZOBR_RS12895 AZOBR_RS12895 (carbamoyl phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.1430.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1430.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.