Alignments for a candidate for hisC in Azospirillum brasilense Sp245

Align histidinol-phosphate aminotransferase [EC:2.6.1.9] (characterized)
to candidate AZOBR_RS20485 AZOBR_RS20485 histidinol-phosphate aminotransferase

Query= reanno::azobra:AZOBR_RS20485
         (364 letters)



>FitnessBrowser__azobra:AZOBR_RS20485
          Length = 364

 Score =  729 bits (1882), Expect = 0.0
 Identities = 364/364 (100%), Positives = 364/364 (100%)

Query: 1   MTQPNNGPAPRPGILDIAPYVGGEHAGHIRLASNEGALGPSPRAVEAYRAAAGELHRYPD 60
           MTQPNNGPAPRPGILDIAPYVGGEHAGHIRLASNEGALGPSPRAVEAYRAAAGELHRYPD
Sbjct: 1   MTQPNNGPAPRPGILDIAPYVGGEHAGHIRLASNEGALGPSPRAVEAYRAAAGELHRYPD 60

Query: 61  GGSAKLRKAIAERFGLDADRVVCGAGSDELIALLIRAYAGPGDEVLYSQHGFLMYPIGAK 120
           GGSAKLRKAIAERFGLDADRVVCGAGSDELIALLIRAYAGPGDEVLYSQHGFLMYPIGAK
Sbjct: 61  GGSAKLRKAIAERFGLDADRVVCGAGSDELIALLIRAYAGPGDEVLYSQHGFLMYPIGAK 120

Query: 121 SVGATPVQAPETNLTTDVDSLLAHVTPRTRLVFVANPNNPTGTYITADEMARLHAGLPEN 180
           SVGATPVQAPETNLTTDVDSLLAHVTPRTRLVFVANPNNPTGTYITADEMARLHAGLPEN
Sbjct: 121 SVGATPVQAPETNLTTDVDSLLAHVTPRTRLVFVANPNNPTGTYITADEMARLHAGLPEN 180

Query: 181 AILVIDAAYAEYMNHNDYSAGQELVDRFPNVVMTRTFSKIFALGSVRLGWAYCPAGIADV 240
           AILVIDAAYAEYMNHNDYSAGQELVDRFPNVVMTRTFSKIFALGSVRLGWAYCPAGIADV
Sbjct: 181 AILVIDAAYAEYMNHNDYSAGQELVDRFPNVVMTRTFSKIFALGSVRLGWAYCPAGIADV 240

Query: 241 LNRVRGPFNVSSAAQIAGVAALEDTAFLERSRSHNIEWREWFVQQVHGLGLKTHPSVTNF 300
           LNRVRGPFNVSSAAQIAGVAALEDTAFLERSRSHNIEWREWFVQQVHGLGLKTHPSVTNF
Sbjct: 241 LNRVRGPFNVSSAAQIAGVAALEDTAFLERSRSHNIEWREWFVQQVHGLGLKTHPSVTNF 300

Query: 301 VLVDFAGQTAGKDDAEAARLFLKGRGILVRQMPAYGLPSCLRVTIGTEAEMREVVQALKD 360
           VLVDFAGQTAGKDDAEAARLFLKGRGILVRQMPAYGLPSCLRVTIGTEAEMREVVQALKD
Sbjct: 301 VLVDFAGQTAGKDDAEAARLFLKGRGILVRQMPAYGLPSCLRVTIGTEAEMREVVQALKD 360

Query: 361 FLAA 364
           FLAA
Sbjct: 361 FLAA 364


Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 622
Number of extensions: 15
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 364
Length adjustment: 29
Effective length of query: 335
Effective length of database: 335
Effective search space:   112225
Effective search space used:   112225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate AZOBR_RS20485 AZOBR_RS20485 (histidinol-phosphate aminotransferase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.8519.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8519.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.