Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Asp/Glu-ADT subunit B; EC 6.3.5.- (characterized)
to candidate AZOBR_RS20650 AZOBR_RS20650 glutamyl-tRNA amidotransferase subunit B
Query= SwissProt::Q9RF06
(475 letters)
>FitnessBrowser__azobra:AZOBR_RS20650
Length = 483
Score = 440 bits (1131), Expect = e-128
Identities = 221/473 (46%), Positives = 324/473 (68%), Gaps = 5/473 (1%)
Query: 3 FETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRA 62
+E VIGLEVH ++ +++K+FS + FGAEPNS + +D A+PG+LPV+N+R ++ A+R
Sbjct: 11 WEIVIGLEVHAQVISNAKLFSGAATAFGAEPNSQVSFVDAAFPGMLPVINERCIEQAVRT 70
Query: 63 AMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEV-DGETKRIGITRL 121
+ L +I S FDRKNYFY D P+ YQISQ+ QPI G I +++ DG ++ +G+TRL
Sbjct: 71 GLGLKAQINLHSVFDRKNYFYADLPQGYQISQYLQPIVGKGEIVLDLPDGSSRTVGVTRL 130
Query: 122 HMEEDAGKSTHKGE--YSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGV 179
H+E+DAGKS H + +DLNR G L+EIVSEPD+R+ +EA AY+ KLRSI++Y G
Sbjct: 131 HLEQDAGKSLHDQHPAKTYIDLNRSGVALMEIVSEPDMRTAEEAGAYVRKLRSILRYLGT 190
Query: 180 SDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEELLSGG 239
D MEEGS+RCD N+S+R G FGT+ E+KN+NS +V + +EYE +RQ E + GG
Sbjct: 191 CDGNMEEGSMRCDVNVSVRKPGAP-FGTRCEIKNVNSIRFVMQAIEYEARRQIEIIEEGG 249
Query: 240 EIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPDER 299
+I QETR +D + T MR KE + DYRYFP+PD++PL +D W E +++T+PELPD++
Sbjct: 250 KIDQETRLWDTTKFVTRSMRSKEEAHDYRYFPDPDLLPLELDADWVEDIKKTLPELPDDK 309
Query: 300 KAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVEL 359
KA++++E L YDA+VL K +DF+E+ + G D KL +NW+ G + YLNK E+
Sbjct: 310 KARFISEYKLSPYDANVLVSEKARADFYEA-VAKGRDPKLAANWVTGELFGYLNKAGKEI 368
Query: 360 LDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEATLL 419
++ ++ ENL G+I LI D T+S +IAK+VF + G I+E GL Q++D +
Sbjct: 369 EESPVSAENLGGLIDLIADNTISGRIAKEVFEAMFETGEKPADIVEKKGLRQVTDTGAIE 428
Query: 420 KFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQEL 472
++ L N V ++++GK K GF VGQ+MKA++G+ANP LVN++L +L
Sbjct: 429 SSIDAVLAANADKVAEFRSGKDKLFGFFVGQVMKATQGKANPALVNEILMAKL 481
Lambda K H
0.313 0.133 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 616
Number of extensions: 27
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 483
Length adjustment: 34
Effective length of query: 441
Effective length of database: 449
Effective search space: 198009
Effective search space used: 198009
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)
Align candidate AZOBR_RS20650 AZOBR_RS20650 (glutamyl-tRNA amidotransferase subunit B)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.26091.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26091.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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