Align 3-isopropylmalate dehydratase large subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate AZOBR_RS27815 AZOBR_RS27815 isopropylmalate isomerase
Query= SwissProt::Q7TXH6 (473 letters) >FitnessBrowser__azobra:AZOBR_RS27815 Length = 471 Score = 530 bits (1365), Expect = e-155 Identities = 262/459 (57%), Positives = 327/459 (71%), Gaps = 1/459 (0%) Query: 8 PRTLAEKIWDDHIVVSGGGCAPDLIYIDLHLVHEVTSPQAFDGLRLAGRRVRRPELTLAT 67 PR++ +KIWD H+V G L++ID H++HEVTSPQA+ GL AGRR+RRP+LT AT Sbjct: 4 PRSIIDKIWDQHVVADLGD-GRVLLHIDRHMLHEVTSPQAYAGLAAAGRRLRRPDLTFAT 62 Query: 68 EDHNVPTVDIDQPIADPVSRTQVETLRRNCAEFGIRLHSMGDIEQGIVHVVGPQLGLTQP 127 DH V T + P + LR N G+ L +GD+ QGIVHV+ P+LG+ P Sbjct: 63 ADHIVSTENGRTDDTVPGGPEMIRALRANAEATGVALFDLGDVRQGIVHVIAPELGIALP 122 Query: 128 GMTIVCGDSHTSTHGAFGALAMGIGTSEVEHVLATQTLPLRPFKTMAVNVDGRLPDGVSA 187 G T+VCGDSHTST GA GA+A GIGTSEVEHV+ATQT LR TM + V G P GVSA Sbjct: 123 GATLVCGDSHTSTVGALGAMAWGIGTSEVEHVMATQTAILRRPPTMRITVSGTRPAGVSA 182 Query: 188 KDIILALIAKIGTGGGQGHVIEYRGSAIESLSMEGRMTICNMSIEAGARAGMVAPDETTY 247 KD++L LIA IGT G G+ +EY G AI +LSME RMT+CNMS+E GAR G++APDE T+ Sbjct: 183 KDMVLKLIATIGTAGATGYGVEYAGPAIRALSMEERMTVCNMSVELGARFGLIAPDEVTF 242 Query: 248 AFLRGRPHAPTGAQWDTALVYWQRLRTDVGAVFDTEVYLDAASLSPFVTWGTNPGQGVPL 307 A+L+GRP AP GA W+ A+V W+ L +D GA FD E+ LD +SL+P V+WGT+P + + Sbjct: 243 AYLQGRPFAPAGALWEQAVVAWRALASDPGARFDAEIELDVSSLTPQVSWGTSPQDCIGV 302 Query: 308 AAAVPDPQLMTDDAERQAAEKALAYMDLRPGTAMREIAVDAVFVGSCTNGRIEDLRVVAE 367 VPDP+ D RQA +AL Y+ L PGT +R++ VD VF+GSCTN RIEDLR A Sbjct: 303 GETVPDPEREADPKRRQAMRRALDYIGLEPGTPIRDLPVDMVFIGSCTNSRIEDLRAAAA 362 Query: 368 VLRGRKVADGVRMLIVPGSMRVRAQAEAEGLGEIFTDAGAQWRQAGCSMCLGMNPDQLAS 427 VL+GR+VA G+R L+VPGS +VR QAEAEGL +FT AG +WR+ GCSMC GMN D++ Sbjct: 363 VLKGRRVAAGLRALVVPGSGQVRRQAEAEGLDRVFTAAGFEWREPGCSMCAGMNADRVPP 422 Query: 428 GERCAATSNRNFEGRQGAGGRTHLVSPAVAAATAVRGTL 466 G+RC ATSNRNFEGRQG G RTHL SPA AAA AV G + Sbjct: 423 GKRCVATSNRNFEGRQGPGARTHLASPATAAAAAVAGRI 461 Lambda K H 0.319 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 779 Number of extensions: 41 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 473 Length of database: 471 Length adjustment: 33 Effective length of query: 440 Effective length of database: 438 Effective search space: 192720 Effective search space used: 192720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate AZOBR_RS27815 AZOBR_RS27815 (isopropylmalate isomerase)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.11438.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11438.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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