Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate CA265_RS22650 CA265_RS22650 branched chain amino acid aminotransferase
Query= BRENDA::A0A2Z4MEX9 (357 letters) >FitnessBrowser__Pedo557:CA265_RS22650 Length = 354 Score = 312 bits (800), Expect = 8e-90 Identities = 148/349 (42%), Positives = 228/349 (65%), Gaps = 5/349 (1%) Query: 5 LTITRTEQKKEKPAS-DKLGFGVHFTDHMFTMDYTEGKGWHDPQIVPYSPLTLDPAAMVF 63 + IT+ +Q + +L FG FTDHMFT DY +G+ W + QI+PY P+ + PA Sbjct: 7 IKITKADQTRLTVTDFSQLPFGKVFTDHMFTADYEDGE-WKNLQILPYGPIPMSPAISAL 65 Query: 64 HYGQAVFEGLKAYRNQEGKVRLFRPDQNFKRMNRSLERMSMPLIDEEFMVEALKQLVAVD 123 HYGQA+FEGLKAYR +GK+ +FR D+NF+R N+S RMSMP I EE ++ L L+ VD Sbjct: 66 HYGQAIFEGLKAYRQPDGKISVFRADKNFERFNKSAARMSMPGIPEEIFMQGLAALINVD 125 Query: 124 KEWIPTESGQSLYIRPFVIATEPCFGVRASHTYKLVIVLSPVGAYYAGGMKPVKIYVENN 183 ++W+P + +LYIRP + A +P GV+AS TYK ++ +P G YY+ +K + +E Sbjct: 126 EKWVPNQEDYALYIRPVMFAMDPYLGVKASDTYKFALLTTPTGPYYSSALK---VKIETE 182 Query: 184 YVRAVRGGTGNAKVAGNYAGSLKAQVEAKEKGYEQVLWLDGVENKYIEEVGSMNVFFKVK 243 + RA GG G AK AGNYA SL +AK++GY+Q++W D V +++IEE G+ N+ F + Sbjct: 183 FTRADEGGVGFAKTAGNYARSLYPFEQAKKEGYDQLIWTDSVTHEFIEEAGTANLLFVIN 242 Query: 244 GEVWTPALNGSILEGITRDSTIQLLKDWGIPVVEKRISMEDLHTAYVNGELEEAFGTGTA 303 G++ TP++ ++L+G+TRD+ I+L KD G+ V E+R+S++++ NG L EAF GTA Sbjct: 243 GKLVTPSVRSTVLDGVTRDTIIKLAKDAGVEVEERRVSVKEVIEGIENGSLTEAFAAGTA 302 Query: 304 AVISPVGDLNWNGHQMIINGEKTGELTTRLYDEMTGIQYGDREDKFGWS 352 A ++ VG++ +NG + T ++ + ++ I+YG D+FGW+ Sbjct: 303 ATVTHVGEMGYNGQIYKLTDPSTRHISNGIAKKLNDIRYGLAPDEFGWN 351 Lambda K H 0.317 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 393 Number of extensions: 17 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 357 Length of database: 354 Length adjustment: 29 Effective length of query: 328 Effective length of database: 325 Effective search space: 106600 Effective search space used: 106600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate CA265_RS22650 CA265_RS22650 (branched chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.5585.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5585.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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