Alignments for a candidate for trpD_1 in Pedobacter sp. GW460-11-11-14-LB5

Align Aminodeoxychorismate/anthranilate synthase component II (characterized, see rationale)
to candidate CA265_RS22895 CA265_RS22895 aminodeoxychorismate/anthranilate synthase component II

Query= uniprot:A0A1X9ZDE4_9SPHI
         (198 letters)



>FitnessBrowser__Pedo557:CA265_RS22895
          Length = 198

 Score =  409 bits (1051), Expect = e-119
 Identities = 198/198 (100%), Positives = 198/198 (100%)

Query: 1   MEDINKKTVLVIDNYDSFTYNLVHLINEVGYEAEVWRNDKFDLADVEKYDKILLSPGPGI 60
           MEDINKKTVLVIDNYDSFTYNLVHLINEVGYEAEVWRNDKFDLADVEKYDKILLSPGPGI
Sbjct: 1   MEDINKKTVLVIDNYDSFTYNLVHLINEVGYEAEVWRNDKFDLADVEKYDKILLSPGPGI 60

Query: 61  PEEAGLLLDVIRTYAPTKSIFGVCLGQQAIAEVFGGTLLNLGRPMHGIATPVTVVDGDEP 120
           PEEAGLLLDVIRTYAPTKSIFGVCLGQQAIAEVFGGTLLNLGRPMHGIATPVTVVDGDEP
Sbjct: 61  PEEAGLLLDVIRTYAPTKSIFGVCLGQQAIAEVFGGTLLNLGRPMHGIATPVTVVDGDEP 120

Query: 121 LFWECPQTINVGRYHSWVVSKDNFPSCLKITARDHKSEIMALRHETLDVRGVQFHPESVL 180
           LFWECPQTINVGRYHSWVVSKDNFPSCLKITARDHKSEIMALRHETLDVRGVQFHPESVL
Sbjct: 121 LFWECPQTINVGRYHSWVVSKDNFPSCLKITARDHKSEIMALRHETLDVRGVQFHPESVL 180

Query: 181 TEYGKQMMENWLSSSTTV 198
           TEYGKQMMENWLSSSTTV
Sbjct: 181 TEYGKQMMENWLSSSTTV 198


Lambda     K      H
   0.319    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 254
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 198
Length adjustment: 20
Effective length of query: 178
Effective length of database: 178
Effective search space:    31684
Effective search space used:    31684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate CA265_RS22895 CA265_RS22895 (aminodeoxychorismate/anthranilate synthase component II)
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.10645.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10645.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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