Align Methylmalonyl-CoA epimerase; DL-methylmalonyl-CoA racemase; EC 5.1.99.1 (characterized)
to candidate Echvi_0089 Echvi_0089 methylmalonyl-CoA epimerase
Query= SwissProt::O58010
(136 letters)
>FitnessBrowser__Cola:Echvi_0089
Length = 134
Score = 120 bits (302), Expect = 6e-33
Identities = 56/129 (43%), Positives = 96/129 (74%), Gaps = 1/129 (0%)
Query: 6 KRIDHVGIAVKNLEEAIKIWEGL-GFKVEEIEEVPDQKVKVAVIKVGENRIELLEATTED 64
++I+H+GIAVK+L+++ +++ L G + + E V D+ V + +VG+ +IELLEAT D
Sbjct: 2 RKIEHLGIAVKDLKKSNELFSRLFGKEAYKEERVEDEGVLTSFFQVGDVKIELLEATAPD 61
Query: 65 SPIAKFIEKRGEGIHHLAIRVENIESKLEELKQKGYKLIDEKPRVGAGGAKIAFIHPKSV 124
SPIAKFI+KR EG+HH+A V++I ++++ LK+ G++++++ P+ GA + F+HP+S
Sbjct: 62 SPIAKFIDKRAEGVHHVAFAVDDIYAEMDRLKKAGFEILNDVPKKGADHKLVVFLHPRST 121
Query: 125 TGVLLELCE 133
GVL+ELC+
Sbjct: 122 NGVLVELCQ 130
Lambda K H
0.317 0.138 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 93
Number of extensions: 4
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 134
Length adjustment: 15
Effective length of query: 121
Effective length of database: 119
Effective search space: 14399
Effective search space used: 14399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 42 (20.8 bits)
Align candidate Echvi_0089 Echvi_0089 (methylmalonyl-CoA epimerase)
to HMM TIGR03081 (mce: methylmalonyl-CoA epimerase (EC 5.1.99.1))
../bin/blast/fastacmd -i /tmp/list.13187.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13187.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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