Align 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase / chorismate mutase (EC 2.5.1.54; EC 5.4.99.5) (characterized)
to candidate Echvi_0120 Echvi_0120 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
Query= reanno::Cola:Echvi_0120
(367 letters)
>FitnessBrowser__Cola:Echvi_0120
Length = 367
Score = 750 bits (1936), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MKDHLKTSEWGLGLKGHVIIAGPCSAETPEQVEKVCLEMKEQNIIPSMFRAGIWKPRTRP 60
MKDHLKTSEWGLGLKGHVIIAGPCSAETPEQVEKVCLEMKEQNIIPSMFRAGIWKPRTRP
Sbjct: 1 MKDHLKTSEWGLGLKGHVIIAGPCSAETPEQVEKVCLEMKEQNIIPSMFRAGIWKPRTRP 60
Query: 61 GSFEGIGEDGLKWMEIVRHHLNIPITTEVGNTAHVELALKHKVDVLWIGARTTVNPFAVQ 120
GSFEGIGEDGLKWMEIVRHHLNIPITTEVGNTAHVELALKHKVDVLWIGARTTVNPFAVQ
Sbjct: 61 GSFEGIGEDGLKWMEIVRHHLNIPITTEVGNTAHVELALKHKVDVLWIGARTTVNPFAVQ 120
Query: 121 EIAEALKGTDIPVMVKNPMNPDLQLWIGALERLHAVGINKLAAIHRGFSDAYDKRFRNKP 180
EIAEALKGTDIPVMVKNPMNPDLQLWIGALERLHAVGINKLAAIHRGFSDAYDKRFRNKP
Sbjct: 121 EIAEALKGTDIPVMVKNPMNPDLQLWIGALERLHAVGINKLAAIHRGFSDAYDKRFRNKP 180
Query: 181 NWSMPIHLKREWKGMEVINDPSHIVGKRDGILEISQRAINFGLDGLMIETHHDPDNAWSD 240
NWSMPIHLKREWKGMEVINDPSHIVGKRDGILEISQRAINFGLDGLMIETHHDPDNAWSD
Sbjct: 181 NWSMPIHLKREWKGMEVINDPSHIVGKRDGILEISQRAINFGLDGLMIETHHDPDNAWSD 240
Query: 241 AKQQVTPAQLKDILSKIDFKTPLDSEKPSEKLHDLRSAIDHMDDQLIDLLAERFAVIDQI 300
AKQQVTPAQLKDILSKIDFKTPLDSEKPSEKLHDLRSAIDHMDDQLIDLLAERFAVIDQI
Sbjct: 241 AKQQVTPAQLKDILSKIDFKTPLDSEKPSEKLHDLRSAIDHMDDQLIDLLAERFAVIDQI 300
Query: 301 GAHKREHKLTVFQSDRWKEVMDSRTDKGVKKGLSEKFMKELLFSIHEESVKRQEKQLRAG 360
GAHKREHKLTVFQSDRWKEVMDSRTDKGVKKGLSEKFMKELLFSIHEESVKRQEKQLRAG
Sbjct: 301 GAHKREHKLTVFQSDRWKEVMDSRTDKGVKKGLSEKFMKELLFSIHEESVKRQEKQLRAG 360
Query: 361 DPVNKNA 367
DPVNKNA
Sbjct: 361 DPVNKNA 367
Lambda K H
0.318 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 703
Number of extensions: 21
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 367
Length adjustment: 30
Effective length of query: 337
Effective length of database: 337
Effective search space: 113569
Effective search space used: 113569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)
Align candidate Echvi_0120 Echvi_0120 (3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase)
to HMM PF01817 (CM_2)
../bin/blast/fastacmd -i /tmp/list.25061.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25061.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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