Alignments for a candidate for gnd in Echinicola vietnamensis KMM 6221, DSM 17526

Align 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 (characterized)
to candidate Echvi_0478 Echvi_0478 6-phosphogluconate dehydrogenase, decarboxylating

Query= SwissProt::P70718
         (484 letters)



>FitnessBrowser__Cola:Echvi_0478
          Length = 636

 Score =  350 bits (897), Expect = e-100
 Identities = 179/468 (38%), Positives = 279/468 (59%), Gaps = 11/468 (2%)

Query: 8   GVIGLAVMGQNLILNMNDHGFKVVAYNRTTSKVDE-----FLEGAAKGTNIIGAYSLEDL 62
           G+IG+ VMG +L LN+ +   K+  YNRT   V+E      ++   +   I+    L++ 
Sbjct: 168 GIIGMGVMGSSLALNLAEKDVKISVYNRTLQGVEEDVAQKLVDAHPEVKGILPFDKLDEF 227

Query: 63  ANKLEKPRKVMLMVRAGEVVDHFIDALLPHLEAGDIIIDGGNSNYPDTNRRVAALREKGI 122
              LE+PRK+++M+ AG++VD  I  LL  ++ GD+IIDGGNS + D+ +R   L+  GI
Sbjct: 228 VESLEQPRKILMMIPAGQIVDQQIARLLTFVDKGDVIIDGGNSFFEDSAKRQQYLQGYGI 287

Query: 123 RFIGTGVSGGEEGARHGPSIMPGGNEEAWQFVKPVLQAISAKTEQGEPCCDWVGKDGAGH 182
            F+G G+SGG +GA  GPS+MPGG+EE ++ +KP L+ I+ K + G+PC  +VG DGAGH
Sbjct: 288 HFVGMGISGGRDGALKGPSLMPGGSEEGFELIKPYLEKIAGKDKGGKPCMHYVGPDGAGH 347

Query: 183 FVKMVHNGIEYGDMQLICEAYQFLKEGVGLSDDELQATFNEWRNTELDSYLIDITADILG 242
           F+KMVHN IEYG++Q++ E Y F+++G+G+S +E+  TF  W     DSYL+D T  IL 
Sbjct: 348 FIKMVHNSIEYGEIQVLAELYGFMRKGLGMSIEEMVKTFKTWSKEGADSYLMDATLAILS 407

Query: 243 YKDADGSRLVDKVLDTAGQKGTGKWTGINALDFGIPLTLITESVFARCVSAFKDQRVAAS 302
           + + DG  L+D +LD AGQ GTG W    A  +G+P   +T +V AR VS  K+ RV+ +
Sbjct: 408 H-EKDGKLLLDGILDVAGQTGTGGWAVSTAAKYGVPYAPLTAAVTARLVSTHKEARVSFA 466

Query: 303 KLFHKTIGKVEGDKKVWIEAVRKALLASKIISYAQGFMLIREASEHFNWNINYGNTALLW 362
           + + +   ++  D+K  I+A++ A   ++++++  GF LI++  E   W +N    A  W
Sbjct: 467 QTYPRKTDEI--DQKEIIDALKGAYDMARLVNHEIGFSLIKKVGEAEKWGLNMSEIARCW 524

Query: 363 REGCIIRSRFLGNIRDAYEANPDLIFLGSDSYFKGILENAMSDWRKVVAKSIEVGIPMPC 422
             G II+S  +  +   +++   L+   + +  K   EN      +VV   ++ GI MP 
Sbjct: 525 TNGSIIQSSLMEKLAGVFKSTDCLM---ASAALKASFENGAKTLAEVVGAGLKAGIAMPV 581

Query: 423 MASAITFLDGYTSARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNW 470
           M++AI F  G +S +  ANL+QA RD FG H Y   D   G+     W
Sbjct: 582 MSAAINFFYGMSSGQSSANLVQALRDCFGEHGYRLVDDVSGKIHRNKW 629


Lambda     K      H
   0.319    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 796
Number of extensions: 40
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 636
Length adjustment: 36
Effective length of query: 448
Effective length of database: 600
Effective search space:   268800
Effective search space used:   268800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate Echvi_0478 Echvi_0478 (6-phosphogluconate dehydrogenase, decarboxylating)
to HMM TIGR00873 (gnd: 6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44))

Software error:

../bin/blast/fastacmd -i /tmp/list.15945.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15945.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.