Align Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 (characterized)
to candidate Echvi_0744 Echvi_0744 glycine dehydrogenase (decarboxylating)
Query= SwissProt::P26969
(1057 letters)
>FitnessBrowser__Cola:Echvi_0744
Length = 966
Score = 1129 bits (2919), Expect = 0.0
Identities = 561/970 (57%), Positives = 710/970 (73%), Gaps = 18/970 (1%)
Query: 92 LKPSDTFPRRHNSATPDEQTKMAESVGFDTLDSLVDATVPKSIRLKEMKFNKFDGGLTEG 151
L PS F RHN + ++ ++M +G ++D L+D T+PK+I+L + +E
Sbjct: 5 LTPSVKFEDRHNGPSANDVSEMLSKIGASSIDELIDQTIPKAIQLDQPL--NLPEAKSEA 62
Query: 152 QMIEHMKDLASKNKVFKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLE 211
++ + +A+KNK++KSFIG+GYY+T P VILRN++ENP WYT YTPYQAEI+QGRLE
Sbjct: 63 AFLKDFRKMAAKNKIYKSFIGLGYYDTITPGVILRNVLENPGWYTAYTPYQAEIAQGRLE 122
Query: 212 SLLNFQTMITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGKKKT---FIIASNCHPQT 268
+L+NFQTM+ DLTG+ ++NASLLDEGTAAAEAM+M + KK F + QT
Sbjct: 123 ALVNFQTMVMDLTGMELANASLLDEGTAAAEAMNMLFATRPRDKKKATKFFVDEKVFIQT 182
Query: 269 IDICQTRADGFELKVVVKDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFIKKAHANEVK 328
+I +TRA + +V L +++ + ++ GVL+QYP EGE +DY ++KA + V
Sbjct: 183 KEILKTRALPIGVTLVEGSLNELNLEDPELYGVLLQYPNAEGEAIDYKALVEKAKQHNVT 242
Query: 329 VVMASDLLALTVLKPPGEFGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRII 388
++DLLALT+L PPGE GAD+VVG+ QRFGVPMG+GGPHAA+ AT YKR +PGRII
Sbjct: 243 TAFSADLLALTLLTPPGEMGADVVVGTTQRFGVPMGFGGPHAAYFATKDAYKRQVPGRII 302
Query: 389 GVSVDSSGKQALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKAIAQ 448
G+SVD G +A RMA+QTREQHI+R++ATSNICTAQ LLA MA MYAVYHGP+GLK IA
Sbjct: 303 GISVDKDGNKAYRMALQTREQHIKRERATSNICTAQVLLAVMAGMYAVYHGPKGLKDIAL 362
Query: 449 RVHGLAGVFALGLKKLGLEVQDLGFFDTVKVKTSNAKA--IADAAIKSEINLRVVDGNTI 506
++HGLA + A GL KLG E ++ +FDT+K+K + K I A+ E+N R G +
Sbjct: 363 KIHGLAKLTAQGLAKLGFEQENEHYFDTLKIKVDDVKQSKIKAFALSHEMNFRYEPGY-V 421
Query: 507 TAAFDETTTLEDVDKLFKVFAGGKPVSFTA---ASLAPEFQNAIPSGLVRESPYLTHPIF 563
AFDE T+EDV ++ +VFA S AS+ + GL R S Y+ H IF
Sbjct: 422 YLAFDEAKTMEDVQEIIEVFARTTHSSADVVDLASMVDHLSFEVSDGLRRTSDYMDHMIF 481
Query: 564 NTYQTEHELLRYIHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTDLHPFAPT 623
N + +EHE+LRYI RL+++DLSL HSMI LGSCTMKLNAT EM+PVTWP F LHPF P
Sbjct: 482 NAFHSEHEMLRYIKRLENRDLSLVHSMISLGSCTMKLNATAEMIPVTWPEFGQLHPFVPQ 541
Query: 624 EQAQGYQEMFNNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCI 683
+QA GY +F +L + L ITGF SLQPN+GA GE+AGLMVIRAYH SRG+ HRN+ +
Sbjct: 542 DQAAGYYALFQDLRNWLSEITGFAETSLQPNSGAQGEFAGLMVIRAYHESRGESHRNIAL 601
Query: 684 IPASAHGTNPASAAMVGMKIVTIGTDAKGNINIEELKKAAEKHKDNLSAFMVTYPSTHGV 743
IP+SAHGTNPASA M GMK+V + D KGNI++ +LK+ AEKHK+NLS+F+VTYPSTHGV
Sbjct: 602 IPSSAHGTNPASAVMAGMKVVIVKCDDKGNIDLADLKEKAEKHKENLSSFLVTYPSTHGV 661
Query: 744 YEEGIDDICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGP 803
+EE I ++C+I+H+NGGQVYMDGANMNAQVGLTSPG IGADVCHLNLHKTFCIPHGGGGP
Sbjct: 662 FEEAIREMCQIVHENGGQVYMDGANMNAQVGLTSPGVIGADVCHLNLHKTFCIPHGGGGP 721
Query: 804 GMGPIGVKKHLAPFLPSHPVVPTGGIPAPENPQPLGSISAAPWGSALILPISYTYIAMMG 863
GMGPI V KHL FLPS P+V TGG QP+ +ISAAP+GSA ILPISY YIAMMG
Sbjct: 722 GMGPICVAKHLEEFLPSSPLVKTGG------QQPISAISAAPFGSASILPISYAYIAMMG 775
Query: 864 SQGLTDASKIAILNANYMAKRLESYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVA 923
+GL A++ AILNANY+ RL ++P L+ G G AHE I+D R FK G+E ED+A
Sbjct: 776 REGLKHATQTAILNANYIKARLGEFFPTLYTGAQGRAAHEMIVDFREFK-AVGVEVEDIA 834
Query: 924 KRLMDYGFHGPTMSWPVAGTLMIEPTESESKAELDRFCDALISIRKEIAEVEKGNADVHN 983
KRL+DYGFH PT+S+PVAGT+MIEPTESESKAELDRFCDALI+IR EI E+E+G AD N
Sbjct: 835 KRLIDYGFHSPTVSFPVAGTMMIEPTESESKAELDRFCDALIAIRGEIREIEEGKADAEN 894
Query: 984 NVLKGAPHPPSLLMADAWTKPYSREYAAFPAAWLRGAKFWPTTGRVDNVYGDRNLVCTLL 1043
NVLK APH ++M+DAW PYSRE A +P +++ +KFWPT R+D+ YGDRNLVC+ +
Sbjct: 895 NVLKNAPHTAGMVMSDAWDMPYSREKAVYPLEYVKNSKFWPTVRRIDSAYGDRNLVCSCI 954
Query: 1044 PASQAVEEQA 1053
P EE A
Sbjct: 955 PTEDYAEEAA 964
Lambda K H
0.317 0.133 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2375
Number of extensions: 88
Number of successful extensions: 8
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1057
Length of database: 966
Length adjustment: 45
Effective length of query: 1012
Effective length of database: 921
Effective search space: 932052
Effective search space used: 932052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Align candidate Echvi_0744 Echvi_0744 (glycine dehydrogenase (decarboxylating))
to HMM TIGR00461 (gcvP: glycine dehydrogenase (EC 1.4.4.2))
../bin/blast/fastacmd -i /tmp/list.23857.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23857.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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