Alignments for a candidate for fadA in Echinicola vietnamensis KMM 6221, DSM 17526

Align 3-ketoacyl-CoA thiolase; Acetyl-CoA acyltransferase; Beta-ketothiolase; EC 2.3.1.16 (characterized)
to candidate Echvi_1071 Echvi_1071 acetyl-CoA acetyltransferases

Query= SwissProt::O32177
         (391 letters)



>FitnessBrowser__Cola:Echvi_1071
          Length = 391

 Score =  411 bits (1057), Expect = e-119
 Identities = 210/389 (53%), Positives = 265/389 (68%), Gaps = 2/389 (0%)

Query: 3   EAVIVSGARTPVGKAKKGSLATVRPDDLGAICVKETLKRAGGYEGN-IDDLIIGCATPEA 61
           +A I+ G RT VGKAKKG     RPDDL    +K+ +    G E   +DDLI+G A PEA
Sbjct: 2   DAYIIKGYRTAVGKAKKGGFRFYRPDDLAVDVIKKLIADTPGLEAERVDDLIVGNAVPEA 61

Query: 62  EQGLNMARNIGALAGLPYTVPAITVNRYCSSGLQSIAYAAEKIMLGAYDTAIAGGAESMS 121
           EQG+ M R I  +A L   VP   +NRYC SGL++IA A  KI  G  D  IAGG ESMS
Sbjct: 62  EQGMQMGRMISLMA-LGKVVPGFIINRYCGSGLEAIALATAKIKSGMADCIIAGGTESMS 120

Query: 122 QVPMMGHVTRPNLALAEKAPEYYMSMGHTAEQVAKKYGVSREDQDAFAVRSHQNAAKALA 181
            VPMMG+ T  N  +A + P+YY+SMG TAE++AK Y +SRED D FAV SH+ A  A+ 
Sbjct: 121 MVPMMGYKTALNWKIASEHPDYYLSMGLTAEELAKDYDISREDSDQFAVTSHERAISAIK 180

Query: 182 EGKFKDEIVPVEVTVTEIGEDHKPMEKQFVFSQDEGVRPQTTADILSTLRPAFSVDGTVT 241
           EG+FK+EIVP+EV  T +    K   + F    DEG RP T  D+L  L+PAF   G VT
Sbjct: 181 EGRFKEEIVPIEVEETFVDASGKRQTRTFTVDTDEGPRPGTNMDVLGGLKPAFKQGGQVT 240

Query: 242 AGNSSQTSDGAAAVMLMDREKADALGLAPLVKFRSFAVGGVPPEVMGIGPVEAIPRALKL 301
           AGNSSQTSDGAA  ++M       L L P+ +  S++V GV P +MGIGP EA+P+ALK 
Sbjct: 241 AGNSSQTSDGAAFTVVMSERMVKELNLEPVARLVSYSVAGVDPRIMGIGPKEAVPKALKQ 300

Query: 302 AGLQLQDIGLFELNEAFASQAIQVIRELGIDEEKVNVNGGAIALGHPLGCTGTKLTLSLI 361
           AG+++ DI L ELNEAFA+QA+ VIR L +D   VNVNGGA+ALGHPLGCTG KLT+ +I
Sbjct: 301 AGMKMSDISLVELNEAFAAQALAVIRALDMDPNTVNVNGGAVALGHPLGCTGAKLTVQMI 360

Query: 362 HEMKRRNEQFGVVTMCIGGGMGAAGVFEL 390
           +E++RRN+++G+VT C+GGG G AGV EL
Sbjct: 361 NELRRRNQKYGMVTACVGGGQGVAGVVEL 389


Lambda     K      H
   0.316    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 426
Number of extensions: 17
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 391
Length adjustment: 31
Effective length of query: 360
Effective length of database: 360
Effective search space:   129600
Effective search space used:   129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate Echvi_1071 Echvi_1071 (acetyl-CoA acetyltransferases)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.520.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.520.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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