Align Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 (characterized)
to candidate Echvi_1196 Echvi_1196 triosephosphate isomerase
Query= SwissProt::Q8XKU1 (248 letters) >FitnessBrowser__Cola:Echvi_1196 Length = 253 Score = 238 bits (608), Expect = 7e-68 Identities = 128/250 (51%), Positives = 164/250 (65%), Gaps = 4/250 (1%) Query: 1 MRTPIIAGNWKMHYTIDEAVKLVEELKPLVKDAKCE---VVVCPTFVCLDAVKKAVEGT- 56 MR I+AGNWKM+ T +E KL E+ +VKD + VV+ P FV VKK + G Sbjct: 1 MRKKIVAGNWKMNGTQEEGQKLTSEIVNMVKDERISDVTVVLNPPFVHASNVKKLIGGVD 60 Query: 57 NIKVGAQNMHFEEKGAFTGEIAPRMLEAMNIDYVIIGHSERREYFNETDETCNKKVKAAF 116 NI +G QN + GA+TGE + +L + YVIIGHSERREYF E++E +KVK A Sbjct: 61 NIFLGGQNCSDKASGAYTGETSASILASFGATYVIIGHSERREYFAESNEQLTEKVKLAL 120 Query: 117 AHNLTPILCCGETLEQRENGTTNDVIKAQITADLEGLTKEQAEKVVIAYEPIWAIGTGKT 176 + LTPI CCGE LE RE GT +K Q+T L GL++E K+VIAYEPIWAIGTGKT Sbjct: 121 ENGLTPIFCCGEPLEIREAGTHEAYVKDQLTESLFGLSEEDFAKIVIAYEPIWAIGTGKT 180 Query: 177 ATSDQANETIAAIRAMVAEMFGQEVADKVRIQYGGSVKPNTIAEQMAKSDIDGALVGGAS 236 A+SDQA E AAIRA +A +G+++A+ I YGGS KP+ E +K D+DG L+GGAS Sbjct: 181 ASSDQAQEMHAAIRAHLASKYGEKIAEGTSILYGGSCKPDNAPEIFSKPDVDGGLIGGAS 240 Query: 237 LVAADFAQIV 246 L + DF I+ Sbjct: 241 LKSRDFVDII 250 Lambda K H 0.316 0.131 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 187 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 248 Length of database: 253 Length adjustment: 24 Effective length of query: 224 Effective length of database: 229 Effective search space: 51296 Effective search space used: 51296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 46 (22.3 bits)
Align candidate Echvi_1196 Echvi_1196 (triosephosphate isomerase)
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.2123.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2123.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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