Align Diaminopimelate epimerase; DAP epimerase; EC 5.1.1.7; PLP-independent amino acid racemase (uncharacterized)
to candidate Echvi_1430 Echvi_1430 diaminopimelate epimerase
Query= curated2:A6GYX5 (256 letters) >FitnessBrowser__Cola:Echvi_1430 Length = 257 Score = 248 bits (634), Expect = 7e-71 Identities = 130/257 (50%), Positives = 172/257 (66%), Gaps = 5/257 (1%) Query: 1 MKLYKYQGTGNDFIMIDNRLQIFPKQNTALIQKLCDRRFGIGADGLILLENDQSTDFKMV 60 + YKYQGTGNDF+MID+R F ++N L+ +LCDR+FGIGADGLIL+ N + DF+M+ Sbjct: 3 ISFYKYQGTGNDFVMIDDRSAHFDEKNLKLVSQLCDRKFGIGADGLILIRNKEGYDFEMI 62 Query: 61 YYNSDGNQSTMCGNGGRCLVAFAKKLNIIKNKTTFIAIDGLHHATINENDIISLQMKNVE 120 YYN+DG+QS MCGNG RC VAF+ L I+ + F+AIDG H A I + +I +L M +V Sbjct: 63 YYNADGSQS-MCGNGARCAVAFSSFLGIVTEEAHFLAIDGPHDARIEDGNI-ALGMGDVT 120 Query: 121 EVNIHDNYVFLNTGSPHHVQFADNLSNFDVKNEGAKIRYSDLYGQAGSNINFVHQTSPTQ 180 + D+ ++NTGSPHHV+F ++ N+ V + GA IRYSD Y G+N+NFV + Sbjct: 121 AIERVDDDFYVNTGSPHHVRFVKDVENYPVVDTGASIRYSDHYTPKGTNVNFVSTLAEDH 180 Query: 181 FSIRTYERGVEDETLSCGTGATATAIAMKATGKTNSNNITINVQGGKLEVSFNQ-ENSIF 239 +RTYERGVEDETLSCGTG TA A+ + ++I I GG L V F + F Sbjct: 181 IYVRTYERGVEDETLSCGTGVTACALIY--GDQKGIDHIKIKALGGNLAVKFKALPDGRF 238 Query: 240 TNIFLKGPAEFVFETTI 256 TNI L GPA+ VF+ TI Sbjct: 239 TNILLIGPAQQVFKGTI 255 Lambda K H 0.318 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 246 Number of extensions: 10 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 256 Length of database: 257 Length adjustment: 24 Effective length of query: 232 Effective length of database: 233 Effective search space: 54056 Effective search space used: 54056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate Echvi_1430 Echvi_1430 (diaminopimelate epimerase)
to HMM TIGR00652 (dapF: diaminopimelate epimerase (EC 5.1.1.7))
../bin/blast/fastacmd -i /tmp/list.8034.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8034.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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