Alignments for a candidate for galE in Echinicola vietnamensis KMM 6221, DSM 17526

Align UDP-glucose 4-epimerase; EC 5.1.3.2 (characterized, see rationale)
to candidate Echvi_1472 Echvi_1472 UDP-glucose-4-epimerase

Query= uniprot:L0FXG3
         (337 letters)



>FitnessBrowser__Cola:Echvi_1472
          Length = 337

 Score =  685 bits (1767), Expect = 0.0
 Identities = 337/337 (100%), Positives = 337/337 (100%)

Query: 1   MQQILITGGAGYIGSHTAVALVNAGYEPIIVDNFSNSNKEVLNGLEKILGAPVKYHEGDC 60
           MQQILITGGAGYIGSHTAVALVNAGYEPIIVDNFSNSNKEVLNGLEKILGAPVKYHEGDC
Sbjct: 1   MQQILITGGAGYIGSHTAVALVNAGYEPIIVDNFSNSNKEVLNGLEKILGAPVKYHEGDC 60

Query: 61  NDRKFMQAVFEENDLQGVIHFAASKAVGESTKIPLTYYSNNINSLIILLETMKQFGVKDI 120
           NDRKFMQAVFEENDLQGVIHFAASKAVGESTKIPLTYYSNNINSLIILLETMKQFGVKDI
Sbjct: 61  NDRKFMQAVFEENDLQGVIHFAASKAVGESTKIPLTYYSNNINSLIILLETMKQFGVKDI 120

Query: 121 VFSSSCTVYGQPDKLPVKETTPRKDAESPYGNTKKICEDILTDHVKSGAPARVVALRYFN 180
           VFSSSCTVYGQPDKLPVKETTPRKDAESPYGNTKKICEDILTDHVKSGAPARVVALRYFN
Sbjct: 121 VFSSSCTVYGQPDKLPVKETTPRKDAESPYGNTKKICEDILTDHVKSGAPARVVALRYFN 180

Query: 181 PIGAHPSSLIGELPLGVPANLIPFVTQTGAGIREKITVFGDDYNTPDGTCIRDYIHVMDL 240
           PIGAHPSSLIGELPLGVPANLIPFVTQTGAGIREKITVFGDDYNTPDGTCIRDYIHVMDL
Sbjct: 181 PIGAHPSSLIGELPLGVPANLIPFVTQTGAGIREKITVFGDDYNTPDGTCIRDYIHVMDL 240

Query: 241 ADAHVKSIQYLADQPENFIDLFNVGTGNGNTVMEVIKAFEKVSEKPLNYEIGPRRSGDIE 300
           ADAHVKSIQYLADQPENFIDLFNVGTGNGNTVMEVIKAFEKVSEKPLNYEIGPRRSGDIE
Sbjct: 241 ADAHVKSIQYLADQPENFIDLFNVGTGNGNTVMEVIKAFEKVSEKPLNYEIGPRRSGDIE 300

Query: 301 KVWANTDKVSKVLGWTPQFGLEEALRDAWNWQLSLKK 337
           KVWANTDKVSKVLGWTPQFGLEEALRDAWNWQLSLKK
Sbjct: 301 KVWANTDKVSKVLGWTPQFGLEEALRDAWNWQLSLKK 337


Lambda     K      H
   0.316    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 577
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 337
Length adjustment: 28
Effective length of query: 309
Effective length of database: 309
Effective search space:    95481
Effective search space used:    95481
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate Echvi_1472 Echvi_1472 (UDP-glucose-4-epimerase)
to HMM TIGR01179 (galE: UDP-glucose 4-epimerase GalE (EC 5.1.3.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.9719.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9719.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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