Alignments for a candidate for glpK in Echinicola vietnamensis KMM 6221, DSM 17526

Align Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 (characterized)
to candidate Echvi_1770 Echvi_1770 glycerol kinase

Query= SwissProt::Q9WX53
         (496 letters)



>FitnessBrowser__Cola:Echvi_1770
          Length = 500

 Score =  619 bits (1597), Expect = 0.0
 Identities = 292/488 (59%), Positives = 370/488 (75%), Gaps = 1/488 (0%)

Query: 3   QYILAIDQGTTSSRAILFNQKGEIVHMAQKEFTQYFPQPGWVEHNANEIWGSVLAVIASV 62
           Q+I+A+DQGTTSSRAILF+Q G+ + +AQK+F Q+FP+ GWVEH+A EIW S  AVI   
Sbjct: 6   QFIMALDQGTTSSRAILFDQSGQSIAIAQKDFKQHFPKAGWVEHDAKEIWTSQAAVILEA 65

Query: 63  LSEAQVKPEQVAGIGITNQRETTVVWVKDTGNPIYNAIVWQSRQTAGICDELKAKGYDPL 122
           +++A+++P QVAGIGITNQRETT++W + +G P+Y AIVWQ R+T+  C+ LK +GY  +
Sbjct: 66  IAQAEIEPGQVAGIGITNQRETTILWDRKSGKPLYRAIVWQDRRTSAYCNRLKREGYRDM 125

Query: 123 FREKTGLLIDAYFSGTKVKWILDHVEGARERAERGELLFGTIDTWLIWKLSGGRAHVTDY 182
             +KTGL+IDAYFS TK+KWILD+VEG RE+AE+GE+ FGT+D+WL+WKL+ G+ H+TD 
Sbjct: 126 INQKTGLIIDAYFSATKIKWILDNVEGVREKAEKGEVCFGTVDSWLVWKLTNGQQHLTDI 185

Query: 183 SNASRTLMFNIHTLEWDDELLAILNVPKAMLPEVRPSSEVYAKTVPHHFFGVEVPIAGAA 242
           +NASRT++FNIH  +WD+ELL + ++PK++LPEVR SSEVY  T     F  ++PI G A
Sbjct: 186 TNASRTMLFNIHDKQWDEELLELFDIPKSILPEVRSSSEVYCTTAGD-IFSAKIPIGGIA 244

Query: 243 GDQQAALFGQACFTEGMAKNTYGTGCFMLMNTGEKAVQSKHGLLTTIAWGIDGKVEYALE 302
           GDQQAALFGQ C   GM K TYGTGCFM+MNTGEK VQS + LLTTIAW + GKV YALE
Sbjct: 245 GDQQAALFGQRCTQPGMVKTTYGTGCFMVMNTGEKPVQSSNQLLTTIAWEVAGKVHYALE 304

Query: 303 GSIFVAGSAIQWLRDGLRMIKTAADSEAYAEKVESTDGVYVVPAFVGLGTPYWDSEVRGA 362
           GS+F+ G+AIQWLRDGL + + A  SE+ A  VE   GVY VPA  GLG PYWD + RGA
Sbjct: 305 GSVFIGGAAIQWLRDGLAIFEEAEQSESLATSVEDNGGVYFVPALTGLGAPYWDQDARGA 364

Query: 363 VFGLTRGTTKEHFIRATLESLAYQTKDVLAAMEADSGISLTTLRVDGGAVKNNFLMQFQS 422
            FG+TRGTT+ HF RA LE++A+Q  DVLAAME D+G     +RVDGGA  NNFLMQFQ+
Sbjct: 365 FFGITRGTTQAHFARAALEAIAFQVFDVLAAMEKDAGAKTKEMRVDGGASANNFLMQFQA 424

Query: 423 DLLAVPVERPVINETTALGAPYLAGLAVGYWNSRDDIAAQWQLERRFEPKMDDDKRTMLY 482
           DLL   V+RP I ETTALGA +LAGLAVGYW  + ++   W+ E  F PK D +    L 
Sbjct: 425 DLLRSEVKRPQITETTALGAAFLAGLAVGYWKDQTELQQLWKEEASFPPKSDRNVTDELL 484

Query: 483 DGWKKAVR 490
             W KAV+
Sbjct: 485 HFWHKAVQ 492


Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 796
Number of extensions: 26
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 500
Length adjustment: 34
Effective length of query: 462
Effective length of database: 466
Effective search space:   215292
Effective search space used:   215292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate Echvi_1770 Echvi_1770 (glycerol kinase)
to HMM TIGR01311 (glpK: glycerol kinase (EC 2.7.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.20843.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20843.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.