Alignments for a candidate for fahA in Echinicola vietnamensis KMM 6221, DSM 17526

Align fumarylacetoacetase (EC 3.7.1.2) (characterized)
to candidate Echvi_2481 Echvi_2481 fumarylacetoacetase

Query= BRENDA::Q94272
         (418 letters)



>FitnessBrowser__Cola:Echvi_2481
          Length = 425

 Score =  447 bits (1150), Expect = e-130
 Identities = 228/420 (54%), Positives = 304/420 (72%), Gaps = 9/420 (2%)

Query: 1   MKSFVSVPQNSDFPIQNLPYGVFSTKADSSRHIGVAIGDQILNLAEIANLFDGPQLKAHQ 60
           +KS+V +P+NSDF I NLP+GVF  K  S R IG+AIGD+I++L  +        +   +
Sbjct: 9   LKSWVQIPKNSDFTIYNLPFGVFRNKRLSPR-IGMAIGDKIVDLHVLFCEGFFSSIHLPE 67

Query: 61  DVFKQSTLNAFMALPRPAWLEARARIQQLLSEDCAVLRDNAHLRSRALVAQSDATMHLPA 120
           +VF + +LN FMAL +P   + R  +Q+LL E+   L+D+   R + +V + +A M +P 
Sbjct: 68  EVFLKDSLNEFMALGKPMTRKVREMVQELLLEENTALKDH-RARGKVMVNRKEAKMLMPV 126

Query: 121 QIGDYTDFYSSIHHATNVGIMFRGKENALMPNWKWLPVGYHGRASSIVVSGTDLKRPVGQ 180
           ++GDYTDFYSS  HATNVG MFR  ENALMPNWK LPVGYHGRASSIV SGT + RP GQ
Sbjct: 127 KVGDYTDFYSSKEHATNVGTMFRDPENALMPNWKHLPVGYHGRASSIVPSGTPIHRPKGQ 186

Query: 181 TKAPDAEVPSFGPSKLMDFELEMAFFVGGPENELGTRVPIEKAEDRIFGVVLMNDWSARD 240
            KAPDAE PSFGPS+ +DFELEMAF    P  ++GT +  ++AE+ IFG VL NDWSARD
Sbjct: 187 FKAPDAEKPSFGPSRRLDFELEMAFITSNP-TKMGTSIRTQEAEEHIFGFVLFNDWSARD 245

Query: 241 IQAWEYVPLGPFLAKSFATTVSPWVVSIEALRPYFVENP-VQDPVPPAYLHHDDPFTLDI 299
           IQAWEYVPLGPFL KSFA+++SPWVV++EAL P+  ++P  ++P+ P YL  +     DI
Sbjct: 246 IQAWEYVPLGPFLGKSFASSISPWVVTLEALAPFRTKSPKPEEPLLP-YLQCEQDHGFDI 304

Query: 300 NLAVSIRPEGDAVDHIVCKTNFKHLYWTLKQQLAHHTVNGCNLRAGDLLGSGTVSGPEEG 359
           +L V I+PEG   + IVC++N+K+LYW + QQLAH TVNGCN+  GD+  SGT+SGPEE 
Sbjct: 305 HLEVGIQPEGKQ-ETIVCRSNYKYLYWNIAQQLAHQTVNGCNINVGDMYASGTISGPEES 363

Query: 360 AYGSMLELSWRGAKEVPV--GSEIRKFLKDGDEVNLSGVCEKNGVRIGFGECRGKVLPAD 417
           ++GSMLEL+W+G K + +  G+E R F++DGD V + G  EK+GVR+GFGE    V+P++
Sbjct: 364 SFGSMLELAWKGTKPIRLDCGAE-RSFIEDGDTVTMRGYAEKDGVRVGFGEVSTAVMPSN 422


Lambda     K      H
   0.319    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 565
Number of extensions: 29
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 425
Length adjustment: 32
Effective length of query: 386
Effective length of database: 393
Effective search space:   151698
Effective search space used:   151698
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate Echvi_2481 Echvi_2481 (fumarylacetoacetase)
to HMM TIGR01266 (fahA: fumarylacetoacetase (EC 3.7.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.6877.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6877.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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