Alignments for a candidate for sdaB in Echinicola vietnamensis KMM 6221, DSM 17526

Align Probable L-serine dehydratase, beta chain; SDH; EC 4.3.1.17; L-serine deaminase; L-SD (uncharacterized)
to candidate Echvi_2833 Echvi_2833 L-serine dehydratase, iron-sulfur-dependent, beta subunit

Query= curated2:O34635
         (220 letters)



>FitnessBrowser__Cola:Echvi_2833
          Length = 225

 Score =  171 bits (433), Expect = 1e-47
 Identities = 91/217 (41%), Positives = 133/217 (61%), Gaps = 1/217 (0%)

Query: 5   SVFDIIGPVMIGPSSSHTAGAARIGRVARSLFGREPERIIVSFYGSFAETYKGHGTDVAI 64
           SVFD+IGPVMIGPSSSHTAG  RI R A  + G  P+  +++FY SFA TY+GHG+D AI
Sbjct: 6   SVFDMIGPVMIGPSSSHTAGVVRIARAAIKVLGGIPDDAVITFYNSFARTYEGHGSDKAI 65

Query: 65  IGGLLDFDTFDERIKTAIQIAEAKGIDIEFR-VEDAVPVHPNTAKITISDEKGELELTGI 123
           IGGL+D  T D RIK A ++AEA+G+   F+ V +A   HPNT K+ ++    ++E+ G 
Sbjct: 66  IGGLMDLKTDDARIKQAFELAEARGLTYIFKSVGNASVFHPNTIKLNLTKGDRKVEVIGE 125

Query: 124 SIGGGKIEITELNGFELRLSGNHPAILVVHNDKFGTIAGVANVLAKFSINVGHMEVARKD 183
           S+GGG I I  ++GF    S     +++  +D  G IA + ++LA+   N+  M V+RK 
Sbjct: 126 SLGGGLINIKSIDGFHAEFSAQEHTLIIKADDVSGAIAFITSILAQEQANIATMSVSRKG 185

Query: 184 IGQLALMTIEVDQNIDDHILDELSKLPNIIQVTKIAD 220
              +A   IE+D  ++   +  L  +  I ++  I D
Sbjct: 186 KRDMACHVIEMDSGLNAITIKYLESISWIHELIYIPD 222


Lambda     K      H
   0.319    0.140    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 144
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 225
Length adjustment: 22
Effective length of query: 198
Effective length of database: 203
Effective search space:    40194
Effective search space used:    40194
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate Echvi_2833 Echvi_2833 (L-serine dehydratase, iron-sulfur-dependent, beta subunit)
to HMM TIGR00719 (sdaAB: L-serine dehydratase, iron-sulfur-dependent, beta subunit (EC 4.3.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.18161.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18161.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.