Alignments for a candidate for HPD in Echinicola vietnamensis KMM 6221, DSM 17526

Align 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (characterized)
to candidate Echvi_2983 Echvi_2983 4-hydroxyphenylpyruvate dioxygenase

Query= BRENDA::Q6KZ98
         (368 letters)



>FitnessBrowser__Cola:Echvi_2983
          Length = 363

 Score =  402 bits (1034), Expect = e-117
 Identities = 204/351 (58%), Positives = 253/351 (72%), Gaps = 3/351 (0%)

Query: 21  HVEFYVSSAKTWSYFMNRGLGFKTVAYAGPETGIRDKISYVMSQGTARISFTSSMNDDSY 80
           HVEFYV +AK  + +     GF+ VAYAGPETGIRD+ SYV+ QG  R+  T+++  D  
Sbjct: 13  HVEFYVGNAKQSAMYYQAAFGFELVAYAGPETGIRDRASYVLKQGKIRLVLTTALYQDHP 72

Query: 81  ISNHVKKHGDGVKDIALEVDDLDEAKSLIEKYGTKVSKINEI-KDGNGKIRTAEIKTYGE 139
           I+ HV KHGDGVK +AL VDD D+A       G    +   I +D NG ++ A I TYGE
Sbjct: 73  IAKHVSKHGDGVKVLALGVDDADKAWQETTSRGAVSHESPRITQDSNGSVKVASICTYGE 132

Query: 140 TVHTLIETGDYNGVFMPGYE-ESEINSKNTGIKKIDHIVGNVYEGEMDSWVNFYIEKLGF 198
           T+HT +E  +Y+G F+PGY  E  IN+ + G+K IDH VGNV  GEM+ WV+FY + +GF
Sbjct: 133 TIHTFVERKNYSGPFLPGYRVEKGINTTSVGLKHIDHCVGNVGWGEMNEWVSFYKKVMGF 192

Query: 199 EHLITFDDKDIRTDYSALRSKVVKY-NDDIVFPINEPAKGLRKSQIEEYLDYYRSEGVQH 257
             L+TFDDKDI T+YSAL SKVV   N  I FPINEPAKG +KSQIEEYLD+Y   GVQH
Sbjct: 193 NLLVTFDDKDISTEYSALMSKVVSNGNGYIKFPINEPAKGKKKSQIEEYLDFYNGPGVQH 252

Query: 258 IALLTDDIIKTVSMMEENGIEFLKTPGSYYESLSSRIGSIDEDLNEIEKHNILVDRDENG 317
           IA+ TDDII TVS + + G+ FL  P +YY++L  R+G IDE +  +++ NILVDRDE G
Sbjct: 253 IAIATDDIISTVSELRKRGVSFLMVPDNYYDNLKDRVGKIDEAIEALKQLNILVDRDEEG 312

Query: 318 YLLQIFTKPVTDRPTFFFEVIQRKGARSFGNGNFKALFEAIEREQAKRGNL 368
           YLLQIFT+PV DRPT F+E+IQRKGA+SFG GNFKALFEAIEREQ  RGNL
Sbjct: 313 YLLQIFTRPVQDRPTLFYEIIQRKGAQSFGKGNFKALFEAIEREQNLRGNL 363


Lambda     K      H
   0.316    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 500
Number of extensions: 31
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 363
Length adjustment: 30
Effective length of query: 338
Effective length of database: 333
Effective search space:   112554
Effective search space used:   112554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 49 (23.5 bits)

Align candidate Echvi_2983 Echvi_2983 (4-hydroxyphenylpyruvate dioxygenase)
to HMM TIGR01263 (hppD: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27))

Software error:

../bin/blast/fastacmd -i /tmp/list.9029.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9029.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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