Alignments for a candidate for uxuA in Echinicola vietnamensis KMM 6221, DSM 17526

Align mannonate dehydratase (EC 4.2.1.8) (characterized)
to candidate Echvi_3100 Echvi_3100 mannonate dehydratase

Query= BRENDA::P24215
         (394 letters)



>FitnessBrowser__Cola:Echvi_3100
          Length = 382

 Score =  467 bits (1201), Expect = e-136
 Identities = 227/382 (59%), Positives = 291/382 (76%), Gaps = 6/382 (1%)

Query: 6   RWYGPNDPVSLADVRQAGATGVVTALHHIPNGEVWSVEEILKRKAIIEDAGLVWSVVESV 65
           RWYGP DPV+LAD+RQAGATG+V+ALHH+PNG +WS EEI KRK  IE AGL WSVVES+
Sbjct: 2   RWYGPQDPVTLADIRQAGATGIVSALHHLPNGVIWSREEIKKRKDTIEAAGLTWSVVESI 61

Query: 66  PIHEDIKTHTGNYEQWIANYQQTLRNLAQCGIRTVCYNFMPVLDWTRTDLEYVLPDGSKA 125
           P+HE+IKT +GNY+++IANY+ ++ NLA  GI TVCYNFMPVLDWTRTDL Y LP+G+KA
Sbjct: 62  PVHENIKTRSGNYQEYIANYKTSIGNLAAEGIHTVCYNFMPVLDWTRTDLAYELPNGAKA 121

Query: 126 LRFDQIEFAAFEMHILKRPGAEADYTEEEIAQAAERFATMSDEDKARLTRNIIAGLPGAE 185
           LRF+    AAF++ IL+RP AE DY+E+ I +A   F  M+++ +  LT NIIAGLPGAE
Sbjct: 122 LRFELQALAAFDLFILQRPNAEKDYSEQVIKRAEAYFKEMTEDAEQLLTNNIIAGLPGAE 181

Query: 186 EGYTLDQFRKHLELYKDIDKAKLRENFAVFLKAIIPVAEEVGVRMAVHPDDPPRPILGLP 245
           EGY+L  F++ L+ Y+ ID  KL  N  +FL+ IIP AE+  V MA+HPDDPP P+ GLP
Sbjct: 182 EGYSLKAFQQVLDTYQHIDADKLATNLRLFLEEIIPTAEKNRVFMAIHPDDPPFPMFGLP 241

Query: 246 RIVSTIEDMQWMVDTVNSMANGFTMCTGSYGVRADNDLVDMIKQFGPRIYFTHLRSTMRE 305
           R++STI+D++ +V    S  NG T CTGS+GVRADNDL  +I++ G  I+F HLRST R 
Sbjct: 242 RVMSTIDDVKRLVTETPSEYNGITFCTGSFGVRADNDLPQIIREHGDHIHFIHLRSTQR- 300

Query: 306 DNPKTFHEAAHLNGDVDMYEVVKAIVEEEHRRKAEGKEDLIPMRPDHGHQMLDDLKKKTN 365
           D    FHEA HL GDV +  V+K +++ + RR+       +PMRPDHGHQMLDDL+K TN
Sbjct: 301 DAYGNFHEANHLEGDVPIVAVIKELIKVQSRRQKS-----LPMRPDHGHQMLDDLRKTTN 355

Query: 366 PGYSAIGRLKGLAEVRGVELAI 387
           PGY+ IGRLKGLAE+RG+E+ +
Sbjct: 356 PGYTGIGRLKGLAELRGLEMGL 377


Lambda     K      H
   0.320    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 510
Number of extensions: 17
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 382
Length adjustment: 30
Effective length of query: 364
Effective length of database: 352
Effective search space:   128128
Effective search space used:   128128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate Echvi_3100 Echvi_3100 (mannonate dehydratase)
to HMM TIGR00695 (uxuA: mannonate dehydratase (EC 4.2.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.7968.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7968.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.