Alignments for a candidate for ilvA in Echinicola vietnamensis KMM 6221, DSM 17526

Align threonine deaminase (EC 4.3.1.19) (characterized)
to candidate Echvi_3354 Echvi_3354 threonine dehydratase

Query= reanno::Pedo557:CA265_RS15860
         (416 letters)



>FitnessBrowser__Cola:Echvi_3354
          Length = 416

 Score =  468 bits (1204), Expect = e-136
 Identities = 233/415 (56%), Positives = 307/415 (73%), Gaps = 5/415 (1%)

Query: 7   NTLDFQS---ASQRLKGVVKRTPLEFNAGLSAHYNANIYLKREDLQIVRSYKLRGAYNKI 63
           N + FQ    AS+ L+ V+  TPL+FN  LS  Y   +YLKREDLQ VRSYK+RGAY+KI
Sbjct: 2   NQVSFQGIIEASEALQEVLHPTPLQFNEQLSEEYGCRVYLKREDLQAVRSYKIRGAYHKI 61

Query: 64  SSLPQDALINGVVCASAGNHAQGVAYSCKKLGIKGVIFMPEITPKQKVKQTYMFGGDNVE 123
           SSL ++    GVVCASAGNHAQGVA++CKKLGIKG IF+P  T  QK+ +  +FG + VE
Sbjct: 62  SSLSEEEKSRGVVCASAGNHAQGVAFACKKLGIKGTIFIPSTTSAQKINRMKLFGKEMVE 121

Query: 124 VVLVGDTFDDCLKEALAYSAEKSATFIPPFDDEKVIEGQATVGVEIYEDLP-DLDMIVMP 182
           +VL GDT+DD  + A  Y  E+ A F+ PFDD KVIEGQ T+  EI +D    +D + +P
Sbjct: 122 IVLSGDTYDDAYQTAAEYCEERGAVFVHPFDDPKVIEGQGTIAKEILDDAEFPVDYLFLP 181

Query: 183 VGGGGLASGVSAYMKTVKPEVKLVGVEPLGAPSMVTAMEYGGPFTLEEIDRFVDGAAVKR 242
           +GGGG+A+GVS Y +   PE KL+G EP GAPSM+T+++      L+EID FVDGAAVK+
Sbjct: 182 IGGGGMAAGVSTYFEQSSPETKLIGTEPKGAPSMLTSIQNLKNTVLDEIDGFVDGAAVKK 241

Query: 243 IGHITYEYCKELLDQMHLIPEGKICTTILKLYNEDAIVVEPAGALSVAALDQL-KDQITG 301
           +G+IT+E C++ LD+M L+PEG+ICTTIL LYN + IVVEPAGA+++AAL    K+++ G
Sbjct: 242 VGNITFEICRKSLDEMLLVPEGRICTTILNLYNNEGIVVEPAGAMTLAALSLYDKEKLKG 301

Query: 302 KTVVCIVSGGNNDIERMQEIKEKSLLFEGLKHYFIVRFPQRPGALKLFVNEVLGPQDDIT 361
           K VVC+VSGGNNDI R  EIKE+SLL+EGLKHYF+V+FPQRPGALK FV+++LGP DDI 
Sbjct: 302 KNVVCVVSGGNNDIMRTAEIKERSLLYEGLKHYFMVQFPQRPGALKDFVSKILGPDDDIA 361

Query: 362 RFEFIKKTNKENGPALVGIELSNKNDYASLLQRMKDFKFEIIELNQDQTLFEYLV 416
            F+F KK N+ENGPA+VGIEL +  +   +  R+K+ +F+   LN++  L   L+
Sbjct: 362 YFQFTKKNNRENGPAVVGIELKDPQNLPGIFDRLKENRFKYNYLNENLDLLTLLM 416


Lambda     K      H
   0.318    0.138    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 547
Number of extensions: 21
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 416
Length adjustment: 31
Effective length of query: 385
Effective length of database: 385
Effective search space:   148225
Effective search space used:   148225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate Echvi_3354 Echvi_3354 (threonine dehydratase)
to HMM TIGR02079 (ilvA: threonine dehydratase (EC 4.3.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.19365.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19365.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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