Alignments for a candidate for gnd in Echinicola vietnamensis KMM 6221, DSM 17526

Align 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 (characterized)
to candidate Echvi_4222 Echvi_4222 6-phosphogluconate dehydrogenase, decarboxylating

Query= SwissProt::P70718
         (484 letters)



>FitnessBrowser__Cola:Echvi_4222
          Length = 484

 Score =  615 bits (1586), Expect = e-180
 Identities = 285/483 (59%), Positives = 372/483 (77%)

Query: 1   MSVKGDIGVIGLAVMGQNLILNMNDHGFKVVAYNRTTSKVDEFLEGAAKGTNIIGAYSLE 60
           MS   DIG+IGLAVMG+NL+LNM   GF V  YNR+T KVD+F++G   G N IG +S++
Sbjct: 1   MSKLADIGLIGLAVMGENLVLNMESKGFSVAVYNRSTDKVDKFIQGRGAGKNFIGTHSVK 60

Query: 61  DLANKLEKPRKVMLMVRAGEVVDHFIDALLPHLEAGDIIIDGGNSNYPDTNRRVAALREK 120
           +L + L+KPRKVM++V+AG+ VD FI+ ++PHLE GDIIIDGGNSN+ DT RR   +  K
Sbjct: 61  ELVDSLQKPRKVMMLVKAGDPVDSFIEQIIPHLEEGDIIIDGGNSNFTDTIRRTEYVESK 120

Query: 121 GIRFIGTGVSGGEEGARHGPSIMPGGNEEAWQFVKPVLQAISAKTEQGEPCCDWVGKDGA 180
           G +++GTGVSGGE GA  GPS+MPGG++ AW  VK + Q++SAK + G PCCDWVG DGA
Sbjct: 121 GFQYVGTGVSGGEIGALRGPSMMPGGSKSAWPHVKEIFQSVSAKVDGGVPCCDWVGADGA 180

Query: 181 GHFVKMVHNGIEYGDMQLICEAYQFLKEGVGLSDDELQATFNEWRNTELDSYLIDITADI 240
           GH+VKM+HNGIEYGDMQ+I EAYQF+K+ +G+  DE+  TF +W + ELDSYLI+ITADI
Sbjct: 181 GHYVKMIHNGIEYGDMQIITEAYQFMKDVLGMDYDEMHKTFKKWNSEELDSYLIEITADI 240

Query: 241 LGYKDADGSRLVDKVLDTAGQKGTGKWTGINALDFGIPLTLITESVFARCVSAFKDQRVA 300
           L YKD DG  +V+K+LDTAGQKGTGKWTGI A+  G+PLTLI ESVF+R +SA  + R  
Sbjct: 241 LAYKDEDGEPMVEKILDTAGQKGTGKWTGIEAMHLGVPLTLIAESVFSRFLSAQLELRDQ 300

Query: 301 ASKLFHKTIGKVEGDKKVWIEAVRKALLASKIISYAQGFMLIREASEHFNWNINYGNTAL 360
           AS++F       +G+K+  +E ++ A+  +KIISYAQG+ L+ EAS+  NW +NYG+ AL
Sbjct: 301 ASQVFDAPAISFDGNKEAMLEDLKMAVYGAKIISYAQGYNLLMEASKEHNWELNYGDIAL 360

Query: 361 LWREGCIIRSRFLGNIRDAYEANPDLIFLGSDSYFKGILENAMSDWRKVVAKSIEVGIPM 420
           +WR GCIIRS FLG+I+ A++ NP L  L  D +FK  ++NA + WRKV A ++  GIP+
Sbjct: 361 MWRGGCIIRSAFLGDIKKAFDKNPGLPHLLLDDFFKEKVQNAQAGWRKVCAAAVTNGIPV 420

Query: 421 PCMASAITFLDGYTSARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWTGRGGNTAST 480
           P +++A+ + DG+ + RLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWTG G +T ST
Sbjct: 421 PALSAALAYFDGFRTKRLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWTGEGADTVST 480

Query: 481 TYD 483
            Y+
Sbjct: 481 AYN 483


Lambda     K      H
   0.319    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 792
Number of extensions: 35
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 484
Length adjustment: 34
Effective length of query: 450
Effective length of database: 450
Effective search space:   202500
Effective search space used:   202500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate Echvi_4222 Echvi_4222 (6-phosphogluconate dehydrogenase, decarboxylating)
to HMM TIGR00873 (gnd: 6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44))

Software error:

../bin/blast/fastacmd -i /tmp/list.1208.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1208.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.