Alignments for a candidate for CBS in Echinicola vietnamensis KMM 6221, DSM 17526

Align Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 (characterized)
to candidate Echvi_4660 Echvi_4660 cystathionine beta-synthase

Query= SwissProt::P9WP51
         (464 letters)



>FitnessBrowser__Cola:Echvi_4660
          Length = 456

 Score =  362 bits (928), Expect = e-104
 Identities = 208/469 (44%), Positives = 287/469 (61%), Gaps = 25/469 (5%)

Query: 3   IAQHISELIGGTPLVRLNSVVPDGAGTVAAKVEYLNPGGSSKDRIAVKMIEAAEASGQLK 62
           I   I + IG TPLV+LN +     GT+  KVEY NPG S KDR+A+KMI+ AE +G LK
Sbjct: 2   IYNSIIDTIGDTPLVKLNRLNKGIKGTIYVKVEYFNPGNSVKDRMAIKMIDDAEKAGILK 61

Query: 63  PGGTIVEPTSGNTGVGLALVAQRRGYKCVFVCPDKVSEDKRNVLIAYGAEVVVCPTAVPP 122
           PGGTI+E TSGNTG+GLALV   RGYKC+F   DK S++K +VL A GAEVVVCPT V P
Sbjct: 62  PGGTIIEGTSGNTGMGLALVGIARGYKCIFTMADKQSKEKIDVLKAMGAEVVVCPTNVSP 121

Query: 123 HDPASYYSVSDRLVRDIDGAWKPDQYANPEGPASHYVTTGPEIWADTEGKVTHFVAGIGT 182
            DP SYYSV+ +L +DI  ++ P+QY N     +HY TTGPEIW DTEGK+THF AG+GT
Sbjct: 122 DDPRSYYSVAKKLNKDIPNSFYPNQYDNLSNWKAHYETTGPEIWKDTEGKITHFAAGVGT 181

Query: 183 GGTITGAGRYLKEVSGGRVRIVGADPEGSV---------YSGGAGRPYLVEGVGEDFWPA 233
           GGT++G  +YLKE +   V  VG D  GSV         +      PYL EG+GED  PA
Sbjct: 182 GGTMSGTAKYLKEQNPSIVS-VGIDTYGSVFKKYKETGEFDENEIYPYLTEGIGEDILPA 240

Query: 234 AYDPSVPDEIIAVSDSDSFDMTRRLAREEAMLVGGSCGMAVVAALKVA-EEAGPDALIVV 292
             D S+ D  + V+D DS  MTRRL+REE + VG SCG AV  AL+ A +       +V+
Sbjct: 241 NVDFSMIDHFVKVTDKDSAVMTRRLSREEGLFVGWSCGSAVHGALEYARQHLTEQDTMVI 300

Query: 293 LLPDGGRGYMSKIFNDAWMSSYGFLRSRLDGSTEQSTVGDVLRRKSGALPALVHTHPSET 352
           +LPD G  Y+ K++ND WM ++GFL       T   T  D++  ++G+   LV     E 
Sbjct: 301 ILPDHGTRYLGKVYNDDWMKNHGFLE-----DTTFGTARDIISSRNGSY-ELVVAKKGEK 354

Query: 353 VRDAIGILREYGVSQMPVVGAEPPVMAGEVAGSVSERELLSAVFEGRAKLADA-VSAHMS 411
           V+ AI ++ E  VSQ+PV      V  G V GS+++ +LL+ + + + +L DA V   M 
Sbjct: 355 VKAAIHLMNERSVSQIPV------VEDGNVIGSLTDTKLLTKIIQ-KPELKDAPVEEVME 407

Query: 412 PPLRMIGAGELVSAAGKALRDWDALMVVEEGKPVGVITRYDLLGFLSEG 460
             ++ +     +      +    A++V ++   + +IT++D+LG +++G
Sbjct: 408 DSMKFVALDSTLDVLSSMVDKDKAVLVRDDLHQIHIITKHDILGAITKG 456


Lambda     K      H
   0.316    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 548
Number of extensions: 18
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 456
Length adjustment: 33
Effective length of query: 431
Effective length of database: 423
Effective search space:   182313
Effective search space used:   182313
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate Echvi_4660 Echvi_4660 (cystathionine beta-synthase)
to HMM TIGR01137 (cystathionine beta-synthase (EC 4.2.1.22))

Software error:

../bin/blast/fastacmd -i /tmp/list.13037.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13037.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.