Alignments for a candidate for dapB in Dyella japonica UNC79MFTsu3.2

Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate N515DRAFT_2152 N515DRAFT_2152 dihydrodipicolinate reductase

Query= BRENDA::Q3MFY8
         (278 letters)



>FitnessBrowser__Dyella79:N515DRAFT_2152
          Length = 267

 Score =  141 bits (355), Expect = 2e-38
 Identities = 98/272 (36%), Positives = 140/272 (51%), Gaps = 13/272 (4%)

Query: 9   VIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPITNQLE 68
           V + GA G  G E+ + +A A  L L+ A+  S +H G    +  G  E L+ P+     
Sbjct: 5   VCLAGATGWAGSELARGLAVADGLKLVSAV--SRKHAGATLAQALG-DERLDAPV----- 56

Query: 69  PMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNLADFAE 128
                 A     P  V +++T PDS   N+ +A+ +G   VVGT+GLS      + + A 
Sbjct: 57  --FATAAEALSKPVDVFMEYTRPDSAKANILAALEHGAHVVVGTSGLSDEDYARIDEAAR 114

Query: 129 KASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAIQTAELLAE 188
                 L   NF++ MVLLQ+ A  A++Y    EII+  +  K DAPSGT  + A  L +
Sbjct: 115 AKGRAVLACGNFALTMVLLQKFAEQAAKYIPSWEIIDYAYEGKPDAPSGTVRELAGRLGK 174

Query: 189 LGKTFNSAIVEETEKIPGARGSLAGEGIRIHSVRLPGLIAHQEVIFGAPGQIYTLRHDTS 248
           + +      +E+T  +   RG   G G ++H+VRLPG +   EVIFG P Q  TLRH+  
Sbjct: 175 VRQPEPGLPLEKTNGVRETRGGTLG-GAQVHAVRLPGFVLGAEVIFGMPDQTLTLRHNAG 233

Query: 249 DRA-CYMPGVLLAIRKVLQL-KSLVYGLEKIL 278
             A  Y+ G LLAIRKV  L   L  GL+K+L
Sbjct: 234 SSAKPYVDGALLAIRKVSGLAPGLHRGLDKVL 265


Lambda     K      H
   0.317    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 215
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 267
Length adjustment: 25
Effective length of query: 253
Effective length of database: 242
Effective search space:    61226
Effective search space used:    61226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate N515DRAFT_2152 N515DRAFT_2152 (dihydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.2869.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2869.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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