Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate Pf1N1B4_1101 Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)
Query= SwissProt::O06491
(485 letters)
>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1101
Length = 483
Score = 497 bits (1279), Expect = e-145
Identities = 247/480 (51%), Positives = 337/480 (70%), Gaps = 3/480 (0%)
Query: 6 HKIT--ELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVD 63
H++T E+ + + K+ +L RI +D ++ +F++L E+ A AK D A
Sbjct: 2 HQLTLAEIARGLADKKFSSEELTKVLLARIAQLDPQLNSFISLTEDLALQQAKAAD-ARR 60
Query: 64 GRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLN 123
E G L G PI KD T+G+RT+C SK+L+NF YDATVV +L A AVT+GK N
Sbjct: 61 ANGESGALLGAPIAHKDLFCTQGIRTSCGSKMLDNFKAPYDATVVAKLAAAGAVTLGKTN 120
Query: 124 MDEFAMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPA 183
MDEFAMGS+ E+S Y KNPWNL+ VPGGSSGGSAAAVAA +P + G+DTGGSIRQPA
Sbjct: 121 MDEFAMGSANESSYYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPA 180
Query: 184 SFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANV 243
+ + GLKPTYGRVSR+G++A+ASSLDQ GP+ RT ED A LLQ ++G D DSTS +
Sbjct: 181 ALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCAILLQGMAGFDPQDSTSIDE 240
Query: 244 DVPDFLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPHSK 303
VPD+ + L G ++GL+I VPKEY G+ + V+A+++ L+ LGA +E+SLP+ +
Sbjct: 241 PVPDYSAGLNGSLQGLRIGVPKEYFSAGLDPRIADLVMASVEELKKLGAVVKEISLPNMQ 300
Query: 304 YALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLGT 363
+A+ YY+++ +EAS+NL+RFDG+R+GYR ++ NL DLYK++R EGFG EV+RRIM+G
Sbjct: 301 HAIPAYYVIAPAEASSNLSRFDGVRFGYRCEDPKNLEDLYKRSRGEGFGPEVQRRIMVGA 360
Query: 364 FALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTMYA 423
+ALS+GYYDAYY KAQK+R LIK DF F + D+I+GPTTP PA+K+G DP+ Y
Sbjct: 361 YALSAGYYDAYYLKAQKIRRLIKNDFMAAFNEVDIILGPTTPNPAWKLGAKNSDPVAAYL 420
Query: 424 NDILTIPVNLAGVPGISVPCGLADGLPLGLQIIGKHFDESTVYRVAHAFEQATDHHKAKP 483
D+ TI NLAG+PG+S+P G DGLP+G+Q++ +F E + VAH ++ TD H P
Sbjct: 421 EDVYTITANLAGLPGLSMPAGFVDGLPVGVQLLAPYFQEGRLLNVAHQYQLNTDWHTRTP 480
Lambda K H
0.315 0.134 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 573
Number of extensions: 16
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 483
Length adjustment: 34
Effective length of query: 451
Effective length of database: 449
Effective search space: 202499
Effective search space used: 202499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)
Align candidate Pf1N1B4_1101 (Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7))
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.17297.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17297.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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