Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate Pf1N1B4_1173 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Query= SwissProt::P0A6F1 (382 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1173 Length = 378 Score = 536 bits (1380), Expect = e-157 Identities = 262/378 (69%), Positives = 300/378 (79%) Query: 1 MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 60 + K A+L L DG+ F G AIGA G VGEVVFNT+MTGYQEILTDPSY++QIVTLTYPHI Sbjct: 1 LTKPAILALADGSIFRGEAIGADGQTVGEVVFNTAMTGYQEILTDPSYAQQIVTLTYPHI 60 Query: 61 GNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTR 120 GN GT D ES +V + GLVIRDLPL+ASN+RNT LS YLK +N+VAIA IDTR+LTR Sbjct: 61 GNTGTTPEDAESDRVWSAGLVIRDLPLVASNWRNTMSLSDYLKANNVVAIAGIDTRRLTR 120 Query: 121 LLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGG 180 +LREKGAQNGCI+AGDN A+ A+ FPGL GMDLAK V+T E Y W W L Sbjct: 121 ILREKGAQNGCIMAGDNISEEAAIAAAQGFPGLKGMDLAKVVSTKEKYEWRSTVWDLKTD 180 Query: 181 LPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSN 240 + ELP+HVVAYD+G K NILRMLV+RGCR+T+VPAQT A + L + PDG+FLSN Sbjct: 181 SHATLEASELPYHVVAYDYGVKVNILRMLVERGCRVTVVPAQTPAAEALALKPDGVFLSN 240 Query: 241 GPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDV 300 GPGDP PCDYAI AI+ LET+IPVFGICLGHQLLALASGAKT+KM GHHG NHPV+D+ Sbjct: 241 GPGDPEPCDYAIQAIKDVLETEIPVFGICLGHQLLALASGAKTLKMGHGHHGANHPVQDL 300 Query: 301 EKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGP 360 + VVMIT+QNHGFAVDEATLP N+R HKSLFDGTLQGI RTDK AFSFQGHPEASPGP Sbjct: 301 DSGVVMITSQNHGFAVDEATLPGNVRAIHKSLFDGTLQGIERTDKSAFSFQGHPEASPGP 360 Query: 361 HDAAPLFDHFIELIEQYR 378 +D APLFD FI + + R Sbjct: 361 NDVAPLFDRFINEMAKRR 378 Lambda K H 0.318 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 515 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 382 Length of database: 378 Length adjustment: 30 Effective length of query: 352 Effective length of database: 348 Effective search space: 122496 Effective search space used: 122496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate Pf1N1B4_1173 (Carbamoyl-phosphate synthase small chain (EC 6.3.5.5))
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.14043.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14043.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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