Align IGP synthase, amidotransferase subunit (EC 4.3.2.10) (characterized)
to candidate Pf1N1B4_1626 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Query= reanno::HerbieS:HSERO_RS20325 (212 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1626 Length = 212 Score = 198 bits (503), Expect = 7e-56 Identities = 107/211 (50%), Positives = 127/211 (60%), Gaps = 4/211 (1%) Query: 1 MNKIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSL 60 M + V+DYGMGNL SVA+AL HV V I+ + IR ADRVV PG GA+ DCM + Sbjct: 1 MQTVAVIDYGMGNLHSVAKALEHVGA-GKVLITSDADVIREADRVVFPGVGAIRDCMAEI 59 Query: 61 RESGVQDAVIEASRTKPLFGVCVGEQMLFDWSEEGD-TPGLGLLPGKVVRFDLEGMRQDD 119 R G V E S+ +P G+CVG Q L D SEE + +GL PG+V F + +D Sbjct: 60 RRLGFDSLVREVSQDRPFLGICVGMQALLDSSEENNGVDCIGLFPGQVKFFGKD--LHED 117 Query: 120 GSLFKVPQMGWNHVHQTSRHPLWEGIADNAFFYFVHSYYAVPAESAHVVGQTPYGRDFAC 179 G KVP MGWN V QT HPLW I D A FYFVHSYY + VVG YG DFA Sbjct: 118 GEHLKVPHMGWNEVKQTVEHPLWHNIPDLARFYFVHSYYIAAGNARQVVGSGHYGVDFAA 177 Query: 180 AVARDNIFATQFHPEKSASAGLQLYRNFVHW 210 A+A + FA QFHPEKS + GLQL +NF W Sbjct: 178 ALADGSRFAVQFHPEKSHTHGLQLLQNFAAW 208 Lambda K H 0.322 0.137 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 165 Number of extensions: 6 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 212 Length of database: 212 Length adjustment: 21 Effective length of query: 191 Effective length of database: 191 Effective search space: 36481 Effective search space used: 36481 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 45 (21.9 bits)
Align candidate Pf1N1B4_1626 (Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-))
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))
../bin/blast/fastacmd -i /tmp/list.4259.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4259.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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