Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate Pf1N1B4_3014 Threonine synthase (EC 4.2.3.1)
Query= BRENDA::Q8YFS0 (463 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3014 Length = 469 Score = 517 bits (1331), Expect = e-151 Identities = 268/462 (58%), Positives = 324/462 (70%), Gaps = 2/462 (0%) Query: 1 MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLT 60 M+Y+STRG+AP L F D LLAGLA DGGLY+P+ P+FT E+I + G Y E+A V+ Sbjct: 1 MRYISTRGQAPALNFEDVLLAGLATDGGLYVPENLPRFTQEEIASWAGLPYHELAFRVMR 60 Query: 61 PFTGGEIPAADFERMVREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLLA 120 PF G IP ADF++++ E YG F H+AV PL Q + NE+VLELFHGPTLAFKD A+QLL Sbjct: 61 PFVTGSIPDADFKKILEETYGVFSHNAVAPLRQLNGNEWVLELFHGPTLAFKDFALQLLG 120 Query: 121 RMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSS 180 R++DYVL +RGER IVGATSGDTG AAIE +N DIFIL P+ RVS VQ+RQMT+ Sbjct: 121 RLLDYVLEKRGERVVIVGATSGDTGSAAIEGCKHCENVDIFILHPHNRVSEVQRRQMTTI 180 Query: 181 GFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARIMPQVVYYFTAALS 240 N+H ++IEGNFDDCQ +VK F D F L VNSINWARIM Q+VYYF AAL Sbjct: 181 FGENIHNIAIEGNFDDCQEMVKASFADQSFLKGTRLVAVNSINWARIMAQIVYYFHAALQ 240 Query: 241 LGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGAYEMRGV 300 LG P R+VSF+VPTGNFGDIFAGY+A+ MGLPI QLI+ATN NDIL R + Y + Sbjct: 241 LGGPARSVSFSVPTGNFGDIFAGYLARNMGLPINQLIVATNRNDILHRFMSGNQYVKETL 300 Query: 301 AQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSA 360 T SPSMDI +SSNFERLLF+ HGR+ AA+ GLM KQ GGF++ E+ + R F + Sbjct: 301 HATLSPSMDIMVSSNFERLLFDLHGRNGAAIAGLMDTFKQGGGFSVEEERWTEARKLFDS 360 Query: 361 GRSTVDETAATIESVLSKDGYLLDPHSAIGVKVARE-KASGTAPMVVLATAHPAKFPDAV 419 +T TI V + G LLDPH+AIGVK ARE + S PMV+L TAHP KFPDAV Sbjct: 361 LAVDDAQTCETIAEVFEQTGELLDPHTAIGVKAARECRRSLDIPMVILGTAHPVKFPDAV 420 Query: 420 -KAACGVEPQLPAWLCDLMQRKESFTVLHNELKIVEEYVRHH 460 KA G +LPA L DL +R E TVL N+LK V+ +V H Sbjct: 421 EKAGVGKALELPAHLSDLFERDERCTVLPNDLKAVQAFVSQH 462 Lambda K H 0.320 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 569 Number of extensions: 19 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 463 Length of database: 469 Length adjustment: 33 Effective length of query: 430 Effective length of database: 436 Effective search space: 187480 Effective search space used: 187480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate Pf1N1B4_3014 (Threonine synthase (EC 4.2.3.1))
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))
../bin/blast/fastacmd -i /tmp/list.31244.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31244.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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