Alignments for a candidate for hisC in Pseudomonas fluorescens FW300-N1B4

Align histidinol-phosphate aminotransferase; tyrosine/phenylalanine aminotransferase (promiscuous) (EC 2.6.1.1; EC 2.6.1.9) (characterized)
to candidate Pf1N1B4_349 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)

Query= metacyc::BSU22620-MONOMER
         (360 letters)



>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_349
          Length = 370

 Score =  275 bits (704), Expect = 1e-78
 Identities = 153/356 (42%), Positives = 209/356 (58%), Gaps = 3/356 (0%)

Query: 7   LKQLKPYQPGKPIEAVKSEYGLD--KVVKLASNENPYGCSEAAKEALHHEIQQLALYPDG 64
           ++QL PY PGKP++ +  E  LD   +VKLASNENP G S  A  A+   + +L  YPDG
Sbjct: 13  VQQLSPYVPGKPVDELARELNLDPANIVKLASNENPLGASPKALAAIREALTELTRYPDG 72

Query: 65  YSAALRTRLSKHLNVSETSLIFGNGSDEIIQIICRAFLNDKTNTVTAAPTFPQYKHNAVI 124
              AL+T L+    V    +  GNGS++I++++ RA+L    N V +A  F  Y      
Sbjct: 73  NGFALKTLLADQCRVELNQVTLGNGSNDILELVARAYLAPGLNAVFSAHAFAVYPIVTQA 132

Query: 125 EGAEVREIALRPDGSHDLDAMLEAIDEQTQVVWICSPNNPTGTYTSEGELLAFLERVPSR 184
            GA+ + I  + D  HDL AML AID  T+VV+I +PNNPTGT+     L  FL+ VP+ 
Sbjct: 133 VGAQAKVIPAK-DWGHDLSAMLAAIDADTRVVFIANPNNPTGTWFDAQALDDFLQDVPAH 191

Query: 185 VLVVLDEAYYEYVTAEDYPETVPLLSKYSNLMILRTFSKAYGLAALRVGYGIADENLIRQ 244
           VLVVLDEAY EY    D P+ +  L+ Y NL++ RTFSKAYGLA+LRVGYG++   +   
Sbjct: 192 VLVVLDEAYIEYAEGSDLPDGLDYLAAYPNLLVSRTFSKAYGLASLRVGYGLSSAIVADV 251

Query: 245 IEPAREPFNTSRLGQAAAIAALDDQAFIASCVEQNNAGLQQYYDFAKTHGLKCYPSQTNF 304
           +   R+PFN + L  AAA AAL D  ++A     N +G+QQ     +  GL   PS+ NF
Sbjct: 252 LNRVRQPFNVNSLALAAACAALQDVEYLAESRRLNESGMQQLQAGFRELGLSWIPSKGNF 311

Query: 305 VLIDFKRPADELFQALLEKGYIVRSGNALGFPTSLRITIGTKEQNEEILAILAEIL 360
           + +D  R A  +F+ LL +G IVR     G P  LRITIG   +N   L  L +++
Sbjct: 312 ICVDLGRVAAPVFEGLLREGVIVRPVANYGMPNHLRITIGLPAENSRFLEALTKVM 367


Lambda     K      H
   0.317    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 350
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 370
Length adjustment: 30
Effective length of query: 330
Effective length of database: 340
Effective search space:   112200
Effective search space used:   112200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate Pf1N1B4_349 (Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57))
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.28806.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28806.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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