Alignments for a candidate for serB in Pseudomonas fluorescens FW300-N1B4

Align Phosphoserine phosphatase; PSP; PSPase; EC 3.1.3.3 (characterized)
to candidate Pf1N1B4_3813 Homoserine kinase (EC 2.7.1.39)

Query= SwissProt::Q883R9
         (237 letters)



>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3813
          Length = 205

 Score =  379 bits (974), Expect = e-110
 Identities = 189/205 (92%), Positives = 196/205 (95%)

Query: 33  VEIACLDLEGVLVPEIWIAFAEKTGIESLRATTRDIPDYDVLMKQRLRILDEHGLKLADI 92
           VEIACLDLEGVLVPEIWIAFAEKTGI+SLRATTRDIPDYDVLMKQRLRILDEHGLKL+DI
Sbjct: 1   VEIACLDLEGVLVPEIWIAFAEKTGIDSLRATTRDIPDYDVLMKQRLRILDEHGLKLSDI 60

Query: 93  QAVISTLKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHRLITDETD 152
           Q VI+TLKPLEGA EFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHRLITD+  
Sbjct: 61  QEVIATLKPLEGASEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHRLITDDAG 120

Query: 153 RVVSYQLRQKDPKRQSVLAFKSLYYRIIAAGDSYNDTTMLGEADAGILFHAPDNVIREFP 212
           RV  YQLRQKDPKRQSVLAFKSLYYR+IAAGDSYNDTTMLGEADAGILFHAPDNVIREFP
Sbjct: 121 RVTGYQLRQKDPKRQSVLAFKSLYYRVIAAGDSYNDTTMLGEADAGILFHAPDNVIREFP 180

Query: 213 QFPAVHTFDELKKEFIKASNRELVL 237
           QFPAVH+F ELK+EFIKASNR L L
Sbjct: 181 QFPAVHSFAELKQEFIKASNRALSL 205


Lambda     K      H
   0.324    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 248
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 205
Length adjustment: 22
Effective length of query: 215
Effective length of database: 183
Effective search space:    39345
Effective search space used:    39345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)

Align candidate Pf1N1B4_3813 (Homoserine kinase (EC 2.7.1.39))
to HMM TIGR02137 (thrH: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein (EC 3.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.21333.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21333.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.