Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate Pf1N1B4_4476 Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Query= reanno::pseudo5_N2C3_1:AO356_22970
(339 letters)
>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4476
Length = 339
Score = 671 bits (1730), Expect = 0.0
Identities = 324/339 (95%), Positives = 332/339 (97%)
Query: 1 MGNESINWDKLGFDYIKTDKRYLSHWRDGAWDAGTLTDDNVLHISEGSTALHYGQQCFEG 60
MGNESINWDKLGFDYIKTDKRYLSHWR+G WD GTLT+DNVLHISEGSTALHYGQQCFEG
Sbjct: 1 MGNESINWDKLGFDYIKTDKRYLSHWRNGEWDKGTLTEDNVLHISEGSTALHYGQQCFEG 60
Query: 61 LKAYRCKDGSINLFRPDQNAARMQRSCARLLMPQVETEQFVEACKQVVRANERFIPPYGT 120
LKAYRCKDGSINLFRPDQNAARMQRSCARLLMPQV TEQFVEACK+VVRANERFIPPYGT
Sbjct: 61 LKAYRCKDGSINLFRPDQNAARMQRSCARLLMPQVSTEQFVEACKEVVRANERFIPPYGT 120
Query: 121 GGALYLRPFVIGVGDNIGVRTAPEFIFSIFCIPVGAYFKGGLTPHNFLISSFDRAAPQGT 180
GGALYLRPFVIGVGDNIGVRTAPEFIFSIFCIPVGAYFKGGLTPHNFLISS+DRAAPQGT
Sbjct: 121 GGALYLRPFVIGVGDNIGVRTAPEFIFSIFCIPVGAYFKGGLTPHNFLISSYDRAAPQGT 180
Query: 181 GAAKVGGNYAASLMPGSQAKKASFADCIYLDPMTHSKIEEVGSANFFGITHDNTFVTPRS 240
GAAKVGGNYAASLMPGSQAKKA FADCIYLDP+TH+KIEEVGSANFFGITHDN FVTP S
Sbjct: 181 GAAKVGGNYAASLMPGSQAKKAHFADCIYLDPLTHTKIEEVGSANFFGITHDNKFVTPNS 240
Query: 241 PSVLPGITRLSLIELAKSRLGLEVIEGDVFIDKLSDFKEAGACGTAAVITPIGGISYKDK 300
PSVLPGITRLSLIELAK+RLGLEV+EGDVFIDKLSDFKEAGACGTAAVITPIGGISY DK
Sbjct: 241 PSVLPGITRLSLIELAKTRLGLEVVEGDVFIDKLSDFKEAGACGTAAVITPIGGISYNDK 300
Query: 301 LHVFHSETEVGPITQKLYKELTGVQTGDVEAPAGWIVKV 339
LHVFHSETEVGPITQKLYKELTGVQTGDVEAPAGWIVKV
Sbjct: 301 LHVFHSETEVGPITQKLYKELTGVQTGDVEAPAGWIVKV 339
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 574
Number of extensions: 14
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 339
Length adjustment: 28
Effective length of query: 311
Effective length of database: 311
Effective search space: 96721
Effective search space used: 96721
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)
Align candidate Pf1N1B4_4476 (Branched-chain amino acid aminotransferase (EC 2.6.1.42))
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.20850.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20850.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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