Alignments for a candidate for aroB in Synechococcus elongatus PCC 7942

Align 3-dehydroquinate synthase (EC 4.2.3.4) (characterized)
to candidate Synpcc7942_0525 Synpcc7942_0525 3-dehydroquinate synthase

Query= BRENDA::Q3M4V2
         (363 letters)



>FitnessBrowser__SynE:Synpcc7942_0525
          Length = 368

 Score =  466 bits (1198), Expect = e-136
 Identities = 240/363 (66%), Positives = 287/363 (79%), Gaps = 2/363 (0%)

Query: 1   MTSVINVNLPTQSYEIAIAPASLDQIGQSL--AGLKLGKKVLLVSNPTIFKHFGKVAVDS 58
           M+  I V LP  +YEIAIA   L   G  L  A LK G K+L+V+NP I + +G   V +
Sbjct: 1   MSVQIPVALPQNAYEIAIANGGLAAAGTWLQQADLKAGTKLLIVTNPAIGRRYGDRLVAA 60

Query: 59  LEAAGFQVASYCLPAGERYKTLNSIQKLYDIALENRLERSSTMVALGGGVIGDMTGFAAA 118
           L+ AGF V    LPAGERYKT  ++Q++YD ALE RLER S +VALGGGVIGDMTGFAAA
Sbjct: 61  LQEAGFIVDCLTLPAGERYKTPATVQRIYDKALELRLERRSALVALGGGVIGDMTGFAAA 120

Query: 119 TWLRGINVVQVPTTLLAMVDSAIGGKTGVNHPHGKNLIGAFHQPRFVLIDPQVLKTLPVR 178
           TWLRGI+ VQ+PT+LLAMVD++IGGKTGVNHP GKNLIGAFHQP+ VLIDP+ L+TLPVR
Sbjct: 121 TWLRGISFVQIPTSLLAMVDASIGGKTGVNHPRGKNLIGAFHQPKLVLIDPETLQTLPVR 180

Query: 179 EFRAGMAEVIKYGVIWDAELFNQLEQSKRLDQLRYIKPELMDAILTRSCQAKADVVGKDE 238
           EFRAGMAEVIKYGVIWD +LF +LE S  LD+ R +   L+  IL RSC+AKA+VV KDE
Sbjct: 181 EFRAGMAEVIKYGVIWDRDLFERLEASPFLDRPRSLPANLLTLILERSCRAKAEVVAKDE 240

Query: 239 KEGGLRAILNYGHTVGHAVESLTNYRLLKHGEAVGIGMVAAGQIAVNLGLWQQADADRQN 298
           KE GLRAILNYGHT+GHAVESLT YR++ HGEAV IGMVAAG++AV LGLW Q + DRQ 
Sbjct: 241 KESGLRAILNYGHTIGHAVESLTGYRIVNHGEAVAIGMVAAGRLAVALGLWNQDECDRQE 300

Query: 299 ALIEKAGLPTKLPAGLDIEGIIEALQLDKKVKDGKVRFVLPTQIGVVTVTDEVTSDHIRQ 358
           A+I KAGLPT+LP G+D   I+EALQLDKKV+ GKVRF+LPT +G VT+TD+V S  +++
Sbjct: 301 AVIAKAGLPTRLPEGIDQAAIVEALQLDKKVQAGKVRFILPTTLGHVTITDQVPSQTLQE 360

Query: 359 VLQ 361
           VLQ
Sbjct: 361 VLQ 363


Lambda     K      H
   0.319    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 478
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 368
Length adjustment: 30
Effective length of query: 333
Effective length of database: 338
Effective search space:   112554
Effective search space used:   112554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate Synpcc7942_0525 Synpcc7942_0525 (3-dehydroquinate synthase)
to HMM TIGR01357 (aroB: 3-dehydroquinate synthase (EC 4.2.3.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.30059.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30059.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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