Alignments for a candidate for asd in Synechococcus elongatus PCC 7942

Align aspartate semialdehyde dehydrogenase (EC 1.2.1.11) (characterized)
to candidate Synpcc7942_1848 Synpcc7942_1848 aspartate-semialdehyde dehydrogenase

Query= metacyc::AT1G14810-MONOMER
         (375 letters)



>FitnessBrowser__SynE:Synpcc7942_1848
          Length = 354

 Score =  335 bits (859), Expect = 1e-96
 Identities = 166/335 (49%), Positives = 235/335 (70%), Gaps = 8/335 (2%)

Query: 41  LAVVGVTGAVGQEFLSVLSDRDFPYSSIKMLASKRSAGKRVAFDGHEYTVEELTADSFNG 100
           +A++G TGAVG E L +L +R FP + +++LAS RSAG+ + F G   T++E T  +F G
Sbjct: 16  VAILGATGAVGTELLQILEERQFPIAELRLLASPRSAGQTLTFAGETLTIQEATPSAFQG 75

Query: 101 VDIALFSAGGSISKEFGPLAAEKGTIVVDNSSAFRMVDGVPLVIPEVNPEAMKGIKVGMG 160
           +DI L SAGGS SK         G +++DNSSAFRM   VPLV+PEVNPEA    +    
Sbjct: 76  LDIVLASAGGSTSKALAEAIVAAGAVMIDNSSAFRMDPTVPLVVPEVNPEAAAQHQ---- 131

Query: 161 KGALIANPNCSTIICLMAVTPLHHHAKVKRMVVSTYQAASGAGAAAMEELVQQTREVLEG 220
              +IANPNC+TI+  +A+ PL     ++R+VVSTYQ+ASGAGA AM E+ +Q+R +L G
Sbjct: 132 --GIIANPNCTTILMAIALWPLQQRHPIRRIVVSTYQSASGAGARAMAEVQEQSRAILAG 189

Query: 221 KPPTCNIFGQQYAFNLFSHNAPILDNGYNEEEMKLVKETRKIWNDTEVKVTATCIRVPVM 280
           +P    I     AFNLF HN+P+ ++GY EEE+K++ E+RKI+   ++K+TATC+RVPV+
Sbjct: 190 QPAIAEILPYPLAFNLFPHNSPLTESGYCEEELKMLNESRKIFGLPDLKLTATCVRVPVL 249

Query: 281 RAHAESVNLQFENPLDENTAREILKKAPGVYIIDDRASNTFPTPLDVSNKDDVAVGRIRR 340
           RAH+E++N++F  P     ARE +  APG  +++D   N FP P++ S +DDV VGRIR+
Sbjct: 250 RAHSEAINVEFTEPFSVAEAREAIAAAPGARLLEDWDRNYFPMPIEASGEDDVLVGRIRQ 309

Query: 341 DVSQDGNFGLDIFVCGDQIRKGAALNAVQIAEMLL 375
           D+S+     L++++CGDQIRKGAALNAVQIAE+L+
Sbjct: 310 DLSEPN--ALELWICGDQIRKGAALNAVQIAELLV 342


Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 303
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 354
Length adjustment: 29
Effective length of query: 346
Effective length of database: 325
Effective search space:   112450
Effective search space used:   112450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate Synpcc7942_1848 Synpcc7942_1848 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.10814.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10814.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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