Alignments for a candidate for leuD in Cereibacter sphaeroides ATCC 17029

Align 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate WP_002721055.1 RSPH17029_RS12720 3-isopropylmalate dehydratase small subunit

Query= SwissProt::Q1MA52
         (202 letters)



>NCBI__GCF_000015985.1:WP_002721055.1
          Length = 201

 Score =  297 bits (760), Expect = 1e-85
 Identities = 141/200 (70%), Positives = 165/200 (82%)

Query: 1   MDKFVKLTGVAAPLPVVNVDTDMIIPKDYLKTIKRTGLGTGLFAEARYNEDGSENPDFVL 60
           M +F K+TGVAAP+P+VN+DTDMIIPK +LKTI+R+GLG  LF E RYN DGSE P+FVL
Sbjct: 1   MQEFTKVTGVAAPMPLVNIDTDMIIPKQFLKTIQRSGLGKNLFDEMRYNPDGSEIPEFVL 60

Query: 61  NKPAYRDAKILVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPIK 120
           N+PAYRDA+I+VAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPI 
Sbjct: 61  NQPAYRDAQIIVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPIV 120

Query: 121 VSQEDLDKLMDDASRGSNAILTVDLENLEITGPDGGLIKFDLDEFKRHCLLNGLDDIGLT 180
           +  E ++ LM+DA RG+NA +TVDLE   +T  DG    F +D F+RHCL+NGLDDIGLT
Sbjct: 121 MPPEVVEVLMEDARRGANARMTVDLEAQTVTTSDGQSFPFQVDSFRRHCLMNGLDDIGLT 180

Query: 181 LEKGKAIDSFEKKNAASHPW 200
           LEK  +ID FE+  A   PW
Sbjct: 181 LEKAASIDGFERDLATLRPW 200


Lambda     K      H
   0.319    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 212
Number of extensions: 4
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 201
Length adjustment: 21
Effective length of query: 181
Effective length of database: 180
Effective search space:    32580
Effective search space used:    32580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate WP_002721055.1 RSPH17029_RS12720 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.11836.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.11836.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.