Alignments for a candidate for serA in Cereibacter sphaeroides ATCC 17029

Align phosphoglycerate dehydrogenase; EC 1.1.1.95 (characterized)
to candidate WP_002721933.1 RSPH17029_RS00105 phosphoglycerate dehydrogenase

Query= CharProtDB::CH_004924
         (525 letters)



>NCBI__GCF_000015985.1:WP_002721933.1
          Length = 531

 Score =  423 bits (1088), Expect = e-123
 Identities = 219/525 (41%), Positives = 333/525 (63%), Gaps = 5/525 (0%)

Query: 3   RVLVSDKMSNDGLQPL----IESDFIEIVQKNVADAEDELHTFDALLVRSATKVTEDLFN 58
           RVLVSD++S   +Q      +E D++  + K+     + +  +D L +RSATKVTE L  
Sbjct: 4   RVLVSDELSETAVQIFRDRGVEVDYMPKLGKDKEKLAEIIGQYDGLAIRSATKVTEKLLE 63

Query: 59  KMTSLKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQAN 118
           + T+LK++GRAG+GVDN+DI  A++ GVIV+N P GN+I+TAEH  AM+ +  R +P+AN
Sbjct: 64  QATNLKVIGRAGIGVDNVDIPAASRKGVIVMNTPFGNSITTAEHAIAMMFACARQLPEAN 123

Query: 119 ISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRRGAFGMTVHVFDPFLTEERAKK 178
            S  + +W ++ ++G EL+ KTLG++G G IG  +  R     M V  +DPFL+EERAK 
Sbjct: 124 ASTHAGKWEKSRFMGVELFNKTLGVIGAGNIGGIVCDRALGLSMKVVAYDPFLSEERAKA 183

Query: 179 IGVNSRTFEEVLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAAL 238
           +GV     +++L  AD IT+H PLT +T+ +L+ E IAKTKKGVR+INCARGG++DE AL
Sbjct: 184 LGVTKVELDDLLARADFITLHVPLTDKTRNILSAEAIAKTKKGVRIINCARGGLVDEKAL 243

Query: 239 LEALENGHVAGAALDVFEVEPPVDNKLVDHPLVIATPHLGASTKEAQLNVAAQVSEEVLQ 298
            EA+++GHVAGAA DVFEVEP  ++ L + P V+ TPHLGAST EAQ NVA QV+E++  
Sbjct: 244 AEAIKSGHVAGAAFDVFEVEPASESPLFNLPNVVVTPHLGASTTEAQENVALQVAEQMSD 303

Query: 299 FAKGLPVMSAINLPAMTKDEFAKIKPYHQIAGKIGSLVSQCMKEPVQDVAIQYEGTIAKL 358
           +     V +A+N+P++T +E A + P+ ++AG +G+ V Q   EP++ + + Y+G + ++
Sbjct: 304 YLLTGAVQNALNMPSVTAEEAAVMGPWVKLAGHLGAFVGQMTDEPIKAINVLYDGAVGEM 363

Query: 359 ETSFITKALLSGFLKPRVDSTVNEVNAGGVAKERGISFSEKISSSESGYDNCISVKVTGD 418
             + +  A ++G +K   +  VN V+A  VAKERGI  S    +    +D  I + V  D
Sbjct: 364 NLAALNCATIAGIMK-ATNPDVNLVSAPVVAKERGIQISTTTQAKSGAFDAYIKLTVVTD 422

Query: 419 RSTFTVTATYIPHFGERIVEINGFNIDFYPTGHLVYIQHQDTTGVIGRVGRILGDNDINI 478
           +   +V  T       R ++I G NID     H++Y  ++D  G+IG +G  +G N +NI
Sbjct: 423 KRERSVAGTCFSDGKPRFIQIKGINIDAEVGRHMLYTTNEDVPGIIGLLGMTMGKNGVNI 482

Query: 479 ATMQVGRKEKGGEAIMMLSFDRHLEDKIVKELTNVPDIVSVKLID 523
           A   +GR   G EAI +L  D+ ++ K+V+ L +      VK ++
Sbjct: 483 ANFTLGRTSVGQEAIAILYLDQAIDPKVVETLESTGLFQQVKPLE 527


Lambda     K      H
   0.317    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 640
Number of extensions: 24
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 531
Length adjustment: 35
Effective length of query: 490
Effective length of database: 496
Effective search space:   243040
Effective search space used:   243040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_002721933.1 RSPH17029_RS00105 (phosphoglycerate dehydrogenase)
to HMM TIGR01327 (serA: phosphoglycerate dehydrogenase (EC 1.1.1.95))

Software error:

../bin/blast/fastacmd -i /tmp/list.25745.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.25745.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.